View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_high_1 (Length: 926)
Name: NF4124_high_1
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 9 - 908
Target Start/End: Original strand, 31548581 - 31549481
Alignment:
| Q |
9 |
acatcatcataacagatataccattttgggctaggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgccttctgtgctacg |
108 |
Q |
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| T |
31548581 |
acatcatcacaacagatataccattttgggctaggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgccttctgtgctacg |
31548680 |
T |
|
| Q |
109 |
actttcatccggcaacaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctgannnnn |
208 |
Q |
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| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31548681 |
attttcatctggcaacaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctgatattt |
31548780 |
T |
|
| Q |
209 |
nncttataatcaacaaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaat |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31548781 |
t-cttataatcaacaaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaat |
31548879 |
T |
|
| Q |
309 |
cttctaagcgtctttgcaactcgtcgacaagtttttgttgcccttcaaattctgtccttgtctcgaatacagatacatcagtcacctaacaagaaacata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31548880 |
cttctaagcgtctttgcaactcgtcgacaagtttttgttgcccttcaaattctgtccttgtctcgaatacagatacatcagtcacctaacaagaaacata |
31548979 |
T |
|
| Q |
409 |
tgcaattaacaacatgataatcgttataatggatacgttgaatagctatcctaagctgttacggttctaaatcctac-aaaaacactagtggtttttata |
507 |
Q |
| |
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|||||||||||||| ||||||||| |||||| ||||||||||| | ||||||||||||||| |||||| |||| || |||||||| ||||||||||||| |
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| T |
31548980 |
tgcaattaacaacacgataatcgtaataatgaatacgttgaattacaatcctaagctgttacagttctatatccaacaaaaaacacaagtggtttttata |
31549079 |
T |
|
| Q |
508 |
tccaatagcatgcaacctttttataaaaagaatgtctttattacctgcaatttcttctctgcagatgctaacttttcttgcagtgcctttatttgattct |
607 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
31549080 |
tccaatagcatgcaacatttttgtcaaaagaatgtcgtcattacctgcaatttcttctctgcagctgctaacttttcttgcaatgcctttatttgattct |
31549179 |
T |
|
| Q |
608 |
ctttcaatgaacttttttcctgtgaaagaaactcgt-ctatcatgactctaataataaaatagtgtgatatttaatagaaggatatcaggtatagaaacc |
706 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| || | |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
31549180 |
ctttcaatgaacttttttcctgcgaaagaaactcgtcctgttatgactctaatagtaaaatagtgtaatattgaatagaaggatatcaggtatagaaacc |
31549279 |
T |
|
| Q |
707 |
aacctccagttcatttgcttttaatgtcaagctgtccaattcaatgcaagagttctccctagattcttttagtttcatgaactcagcatctaaactttgt |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31549280 |
aacctccagttcatttgcttttaatgtcaagctgtccaattcaatgcaagagttctccctagattcttttagtttcatgaactcagcatctaaactttgc |
31549379 |
T |
|
| Q |
807 |
gcttgagataattgacggtctctatcatctcttacttgtttcaactctcctctcatagaataaacttcactagcaagatcatctttctgctttgtggcct |
906 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549380 |
gcttgagataattgacggtctctatcatctcttacttgtttcaactctcctctcatagaataaacttcactagcaagatcatctttctgctttgtggcct |
31549479 |
T |
|
| Q |
907 |
ct |
908 |
Q |
| |
|
|| |
|
|
| T |
31549480 |
ct |
31549481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 243 - 372
Target Start/End: Complemental strand, 34650366 - 34650237
Alignment:
| Q |
243 |
ttaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaatcttctaagcgtctttgcaactcgtcgacaagttt |
342 |
Q |
| |
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|||||||||| ||||| ||||||| ||||| |||| ||||||||||||||||||| ||||||| |||| | || ||| |||| ||||| | || ||||| |
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| T |
34650366 |
ttaccaaaattgtattatgtaattctttcctcagcttctccccttctataagtttgtattctgcatctgccaatcgtttttgtaactcatttacgagttt |
34650267 |
T |
|
| Q |
343 |
ttgttgcccttcaaattctgtccttgtctc |
372 |
Q |
| |
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|||||| ||||| |||||||| |||||||| |
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|
| T |
34650266 |
ttgttgtccttcgaattctgttcttgtctc |
34650237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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