View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4124_high_10 (Length: 442)

Name: NF4124_high_10
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4124_high_10
NF4124_high_10
[»] chr3 (9 HSPs)
chr3 (1-160)||(35865698-35865857)
chr3 (256-426)||(35865953-35866123)
chr3 (256-426)||(35848282-35848452)
chr3 (256-426)||(35774501-35774671)
chr3 (256-424)||(35754378-35754546)
chr3 (61-160)||(35848087-35848186)
chr3 (300-424)||(35735583-35735707)
chr3 (73-152)||(35774318-35774397)
chr3 (55-145)||(35754177-35754267)
[»] scaffold0891 (2 HSPs)
scaffold0891 (256-424)||(3422-3590)
scaffold0891 (72-151)||(3695-3774)
[»] scaffold2086 (1 HSPs)
scaffold2086 (256-424)||(285-453)
[»] scaffold1996 (2 HSPs)
scaffold1996 (256-424)||(285-453)
scaffold1996 (256-319)||(1083-1146)
[»] scaffold1335 (1 HSPs)
scaffold1335 (61-160)||(77-176)
[»] chr5 (3 HSPs)
chr5 (304-341)||(26672102-26672139)
chr5 (304-341)||(26901388-26901425)
chr5 (304-341)||(26943700-26943737)
[»] chr6 (2 HSPs)
chr6 (368-400)||(845011-845043)
chr6 (368-400)||(870295-870327)
[»] chr4 (1 HSPs)
chr4 (306-342)||(37399191-37399227)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 35865698 - 35865857
Alignment:
Q  1 tcaacatgacaatgattgatgatgatcaaatagaaatgttttaactaaaagtaatagaccgattataatataactcaaatagcattgtgatgaagaagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35865698 tcaacatgacaatgattgatgatgatcaaatagaaatgttttaactaaaagtaatagaccgattataatataactcaaatagcattgtgatgaagaagct 35865797  T
Q  101 ctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag 160  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35865798 ctttaattaaattatagaaattaatgtatgatgatcctcccaaattagtagcatctgtag 35865857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 256 - 426
Target Start/End: Original strand, 35865953 - 35866123
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35865953 acatcatagttaatttccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacac 35866052  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaa 426  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  35866053 cataggaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagaa 35866123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 256 - 426
Target Start/End: Original strand, 35848282 - 35848452
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  35848282 acatcatagttaatttccatcccaattttccaagtgttgcataaatacctacaatttgtttgttgctcaacaaagaaaggccaacaaatagtaggcacac 35848381  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaa 426  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  35848382 cataggaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagaa 35848452  T

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Target: chr3; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 256 - 426
Target Start/End: Original strand, 35774501 - 35774671
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    ||||||| |||||||||||| |||||||||||||  ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35774501 acatcatggttaatttccatccctattttccaagacttgcataaataccaacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacac 35774600  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaa 426  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  35774601 cataggaaatagtttcaagtgtagaattccaaccacaatgagttaagaatcccccaattgatggatgagaa 35774671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 256 - 424
Target Start/End: Original strand, 35754378 - 35754546
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    ||||||| |||||||||||| |||| ||||||||||| ||| |||||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  35754378 acatcattgttaatttccattcctactttccaagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacac 35754477  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgag 424  Q
    |  ||||||| ||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  35754478 ctgaagaaatggtttcaattgtagaattccaaccacaatgagttagaaaaaccccaactgatggatgag 35754546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 35848087 - 35848186
Alignment:
Q  61 gattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag 160  Q
    |||||||||| ||||||||| || ||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35848087 gattataatagaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtag 35848186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 424
Target Start/End: Original strand, 35735583 - 35735707
Alignment:
Q  300 atacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaattccaaccacaatgagtt 399  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||  |||||  ||| | ||||||| | |||||||  |||||||||||||||||||||    
T  35735583 atacctacaatttgtttgttgctcagcaaagaaaggccaaccaatcataggcttaccttcagaaatactctcaagtgatgaattccaaccacaatgagtt 35735682  T
Q  400 aggaatcccccaactgatggatgag 424  Q
    |  ||| ||||||||||||||||||    
T  35735683 aaaaataccccaactgatggatgag 35735707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 35774318 - 35774397
Alignment:
Q  73 actcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagc 152  Q
    ||||||||||| || |||||||||| |||||| ||||| || | ||||||||||||||||||||| ||||||||||||||    
T  35774318 actcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagc 35774397  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 35754177 - 35754267
Alignment:
Q  55 tagaccgattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaat 145  Q
    |||||| || ||||||  ||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| |||||||||||||||| ||||    
T  35754177 tagaccaataataataagactcaaaaagcattgtgacgaagaacctctgtaattaacttatggaaattagtgtatgatgatcctccaaaat 35754267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 256 - 424
Target Start/End: Complemental strand, 3590 - 3422
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    ||||||| |||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590 acatcatggttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 3491  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgag 424  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  3490 cataagaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgag 3422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 3774 - 3695
Alignment:
Q  72 aactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtag 151  Q
    ||||||||||||||| ||||||||||  ||| |||| || ||||  ||||||||||||||  |||||||||||| |||||    
T  3774 aactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 3695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2086 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold2086
Description:

Target: scaffold2086; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 256 - 424
Target Start/End: Complemental strand, 453 - 285
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  453 acatcatggttaatttccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcatac 354  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgag 424  Q
    || |||| |||| |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  353 cagaagatatagcttcaagtgtagaattccaaccacaatgagttaggaaccctccaaccgatggatgag 285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1996 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold1996
Description:

Target: scaffold1996; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 256 - 424
Target Start/End: Complemental strand, 453 - 285
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac 355  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  453 acatcatggttaatttccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcatac 354  T
Q  356 cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgag 424  Q
    || |||| |||| |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  353 cagaagatatagcttcaagtgtagaattccaaccacaatgagttaggaaccctccaaccgatggatgag 285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1996; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 1146 - 1083
Alignment:
Q  256 acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgtt 319  Q
    ||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  1146 acatcatggttaatttccatcccaattttccaagtgttgcataaatacctacaatttgtttgtt 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 176 - 77
Alignment:
Q  61 gattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag 160  Q
    |||||||||| ||||||||| || ||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  176 gattataatagaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtag 77  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 26672102 - 26672139
Alignment:
Q  304 ctacaatttgtttgttgttcagcaaagaaaggccaaca 341  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  26672102 ctacaattagtttgttgttcagcaaaaaaaggccaaca 26672139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 26901388 - 26901425
Alignment:
Q  304 ctacaatttgtttgttgttcagcaaagaaaggccaaca 341  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  26901388 ctacaattagtttgttgttcagcaaaaaaaggccaaca 26901425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 26943700 - 26943737
Alignment:
Q  304 ctacaatttgtttgttgttcagcaaagaaaggccaaca 341  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  26943700 ctacaattagtttgttgttcagcaaaaaaaggccaaca 26943737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 845011 - 845043
Alignment:
Q  368 tttcaagtgtagaattccaaccacaatgagtta 400  Q
    |||||||||| ||||||||||||||||||||||    
T  845011 tttcaagtgttgaattccaaccacaatgagtta 845043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 870295 - 870327
Alignment:
Q  368 tttcaagtgtagaattccaaccacaatgagtta 400  Q
    |||||||||| ||||||||||||||||||||||    
T  870295 tttcaagtgttgaattccaaccacaatgagtta 870327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 37399191 - 37399227
Alignment:
Q  306 acaatttgtttgttgttcagcaaagaaaggccaacaa 342  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  37399191 acaattagtttgttgttcagcaaaaaaaggccaacaa 37399227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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