View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_high_11 (Length: 438)
Name: NF4124_high_11
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 11905622 - 11906051
Alignment:
| Q |
1 |
tactacaaatcccctccaccaccgtctccagctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccgccagtttaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11905622 |
tactacaaatcccctccaccaccgtctccatctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccatcagtttacg |
11905721 |
T |
|
| Q |
101 |
tttatgcttctccaccaccacccatctaccattaatctcggaacaccaaagcaccattgatgataaatcatgtaagtttaccatattacattcataacct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11905722 |
tttatgcttctccaccaccacccatctaccattaatctcggaacaccaaagcaccattgatgataaatcatgtaagtttaccatattacattcataacat |
11905821 |
T |
|
| Q |
201 |
atgtggcacgcccaaccatgcatacacagataacaagtttaaatcttatgtgataatcaactaaaatttgtatttgttttcaggttctagctttcaccaa |
300 |
Q |
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|||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11905822 |
atgtggcacgcc-acccatgcatacacagataacacgtttaaatcttatgtgataatcaactaaaatttgtatttgttttcaggttctagctttcaccaa |
11905920 |
T |
|
| Q |
301 |
ggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaagtctgaatgcatcatctttgagctacaata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
11905921 |
ggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttaaataaaagtctgaacgcatcatctttgagctacaata |
11906020 |
T |
|
| Q |
401 |
ttcgttattcagatgagattgagttcatttc |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
11906021 |
ttcgttattcagatgagattgagttcatttc |
11906051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 11892011 - 11892321
Alignment:
| Q |
1 |
tactacaaatcccctccaccaccgtctccagctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccgccagtttaca |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |
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|
| T |
11892011 |
tactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttaca |
11892110 |
T |
|
| Q |
101 |
tttatgcttctccaccaccacccatctaccattaatctcggaacaccaaagcaccattgatgataaatcatgtaagtttacca-tattacattcataacc |
199 |
Q |
| |
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| |||||||||||||||||||| |||||| | || ||| ||||||||| |||||||| |||||||| |||||||||||||| |||| || ||||||| |
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| T |
11892111 |
tctatgcttctccaccaccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattattgcaatcataaca |
11892210 |
T |
|
| Q |
200 |
tatgtggc-acgcccaaccatgcatacacagataacaagtttaaatcttatgtgataatcaactaaaatttgtatttgttttcaggttctagctttcacc |
298 |
Q |
| |
|
|| | |||| |||| || ||||| || ||| |||||||| |||||| |||||||| |||| | |||||||||||||||||||| ||||| | |
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| T |
11892211 |
cttgcatcttttcccacccatacacacacatatcacatgtttaaattttatgtactaatcaacaaaaactcttatttgttttcaggttctagttttcatc |
11892310 |
T |
|
| Q |
299 |
aaggaataaag |
309 |
Q |
| |
|
||||||||||| |
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|
| T |
11892311 |
aaggaataaag |
11892321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 11882825 - 11882946
Alignment:
| Q |
1 |
tactacaaatcccctccaccaccgtctccagctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccgccagtttaca |
100 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||| ||| | |
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|
| T |
11882825 |
tactacaaatcccctccaccaccatcgccgtctcctccacctccttaccactatgtgagtcctcccccaccagtaaagtcacctccaccaccaacttata |
11882924 |
T |
|
| Q |
101 |
tttatgcttctccaccaccacc |
122 |
Q |
| |
|
| |||||||| ||||||||||| |
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|
| T |
11882925 |
tctatgcttcaccaccaccacc |
11882946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 52818357 - 52818289
Alignment:
| Q |
61 |
cctcccccaccagtaaagtctcctccaccgccagtttacatttatgcttctccaccaccacccatctac |
129 |
Q |
| |
|
|||||||||||| | || || ||||| ||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
52818357 |
cctcccccaccaatgaaatcacctcctccgccagtttacatttatgcttccccaccaccacctatctac |
52818289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 413
Target Start/End: Complemental strand, 52818174 - 52818032
Alignment:
| Q |
271 |
tatttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaa |
370 |
Q |
| |
|
||||| ||| |||||| ||| ||||| ||||||||||| || ||||| | ||| ||||||| ||||| || |||| | | ||| |||||||||||||| |
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|
| T |
52818174 |
tatttctttccaggttttagttttcatcaaggaataaatgcaacctccattgggaacaaagtgcaacatttaccttcctgtcgaagttctttgaataaaa |
52818075 |
T |
|
| Q |
371 |
gtctgaatgcatcatctttgagctacaatattcgttattcaga |
413 |
Q |
| |
|
||||||| || |||||| | ||| |||||||| || ||||||| |
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|
| T |
52818074 |
gtctgaaagcctcatctctaagcaacaatatttgtgattcaga |
52818032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 402
Target Start/End: Original strand, 11883086 - 11883209
Alignment:
| Q |
279 |
ttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaagtctgaat |
378 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||| |||||||| |||||| |||||||||| | ||||||| | | ||||| || |||||| ||| | || |
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|
| T |
11883086 |
ttcaggttttagttttcatctaggaataaaggcaagctccatttggagtaaagtgaaacttctagcttcgtgtccgaattcgttaaataaatgtcgggat |
11883185 |
T |
|
| Q |
379 |
gcatcatctttgagctacaatatt |
402 |
Q |
| |
|
| ||| ||||||||||| |||||| |
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|
| T |
11883186 |
gtatcgtctttgagctataatatt |
11883209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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