View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4124_high_14 (Length: 374)
Name: NF4124_high_14
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 37292655 - 37292319
Alignment:
| Q |
16 |
ataatactaacaaacggtttcatacatctttcccaagactgaatcnnnnnnnatcaaaaggctttgagttattttctcatggttcatacaacggtttgga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37292655 |
ataatactaacaaacggtttcatacatctttcccaagactgaatctttttttatcaaaag-ctttgagttattttctcatggttcatacaacggtttgga |
37292557 |
T |
|
| Q |
116 |
nnnnnnnnnnnngaaagtgttgttattgcttgaggcccaagtaatggcgacagagccagagccagagccaactttgccattctcaattgtatctgttgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37292556 |
tttttgttttttgaaagtgttgttattgcttgaggcccaagtaatggcgacagagccagagcca------actttgccattctcaattgtatctgttgtt |
37292463 |
T |
|
| Q |
216 |
gaagatgttcttcaaaaacatggaggccgattaagcgacatcgactttgcttcaagaaaagctcaagaagcttgtaaatatcacatttctctattcnnnn |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37292462 |
gaagatgttcttcaaaaacatggaggccgattaagcgacatcgactttgcttcaagaaaagctcaagaagcttgtaaatatcacatttccctattctttt |
37292363 |
T |
|
| Q |
316 |
nnnnnnnnnncagatattggcattttcttttcctttgaagaaac |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37292362 |
ttacttttttcagatattggcattttcttttcctttgaagaaac |
37292319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University