View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4124_high_19 (Length: 291)
Name: NF4124_high_19
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 2321335 - 2321601
Alignment:
| Q |
16 |
gagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagaga |
115 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2321335 |
gagatggcgtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattatagggagtaaagaga |
2321434 |
T |
|
| Q |
116 |
taaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2321435 |
taaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaattt |
2321534 |
T |
|
| Q |
216 |
caattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatgatgatg |
282 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2321535 |
caattggcagcttccggagggtggccatgttgatttgtcggaaaaagatgaattcactatggtgatg |
2321601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 2327185 - 2327444
Alignment:
| Q |
13 |
gcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327185 |
gcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaag |
2327284 |
T |
|
| Q |
113 |
agataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaa |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2327285 |
agatcaagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaa |
2327384 |
T |
|
| Q |
213 |
tttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcac |
272 |
Q |
| |
|
|||| ||||| || |||||||||| |||||||| |||||||| |||||| ||||||||| |
|
|
| T |
2327385 |
tttcgattggaaggttccggagggtggccatgtcgatttgtcagaaaaatttgaattcac |
2327444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 2294020 - 2294286
Alignment:
| Q |
16 |
gagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagaga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
2294020 |
gagatggcgttggatcctcgtgtttgggaggacccgttggagtttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagaga |
2294119 |
T |
|
| Q |
116 |
taaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2294120 |
taaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaattt |
2294219 |
T |
|
| Q |
216 |
caattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatgatgatg |
282 |
Q |
| |
|
| ||||| || |||| |||||||| |||||||||||| |||||| | | |||||||| ||| ||||| |
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|
| T |
2294220 |
cgattggaaggttccagagggcgggcatgttgatttgacggaaatacaagaattcaccatggtgatg |
2294286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 2303633 - 2303899
Alignment:
| Q |
16 |
gagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagaga |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |
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|
| T |
2303633 |
gagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttggaaggatgagaattttgacattacagggagtaaggaga |
2303732 |
T |
|
| Q |
116 |
taaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaattt |
215 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
2303733 |
taaagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttggaattt |
2303832 |
T |
|
| Q |
216 |
caattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatgatgatg |
282 |
Q |
| |
|
| ||||| ||||||| ||||||||| |||||||||||||||||||| | ||||||| |||| ||||| |
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|
| T |
2303833 |
cgattggaagcttccagagggcggctatgttgatttgtcggaaaaacaagaattcaatatggtgatg |
2303899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 2310351 - 2310617
Alignment:
| Q |
16 |
gagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagaga |
115 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
2310351 |
gagatggcgttggatcgtcgtgtttgggaggacccattggagtttaagccagaaaggtttttgaaggatgagacttttgtcattccaggaagtaaagaga |
2310450 |
T |
|
| Q |
116 |
taaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2310451 |
taaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaattt |
2310550 |
T |
|
| Q |
216 |
caattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatgatgatg |
282 |
Q |
| |
|
| ||||| || |||| |||||||| |||||||||||| |||||| | | |||||||||||| ||||| |
|
|
| T |
2310551 |
cgattggaaggttccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatg |
2310617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 2330900 - 2331163
Alignment:
| Q |
13 |
gcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaag |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2330900 |
gcagagatggggttggaccctcgtgtttgggaggatccaatggaatttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaag |
2330999 |
T |
|
| Q |
113 |
agataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaa |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2331000 |
agataaagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaa |
2331099 |
T |
|
| Q |
213 |
tttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatg |
276 |
Q |
| |
|
|||| ||||| || |||| ||||| || | ||||||||||| || ||| | |||||||||||| |
|
|
| T |
2331100 |
tttcgattggaaggttcccgagggtggtcgcgttgatttgtcagagaaacaggaattcactatg |
2331163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 2351206 - 2351475
Alignment:
| Q |
13 |
gcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaag |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||| |
|
|
| T |
2351206 |
gcagagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagagaggtttttgaaggatgaaacatttgacattacggggagtaaag |
2351305 |
T |
|
| Q |
113 |
agataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaa |
212 |
Q |
| |
|
|||||||||||||||| ||||| | ||| |||||||| ||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
2351306 |
agataaagatgatgccatttggtgttggtaggagaatctgtcccggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaa |
2351405 |
T |
|
| Q |
213 |
tttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatgatgatg |
282 |
Q |
| |
|
|||| ||||| || |||| || || || ||||||||||||||||||||| | ||||||||| || ||||| |
|
|
| T |
2351406 |
tttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtggtgatg |
2351475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 41127234 - 41127474
Alignment:
| Q |
35 |
gtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagataaagatgatgccgtttgg |
134 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
41127234 |
gtgtttgggaagatccattggagtttaaaccagaaaggtttttgaaggatgaggcttttgatattaccgggactaaagagataaagatgatgccgtttgg |
41127333 |
T |
|
| Q |
135 |
agctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagcttccggag |
234 |
Q |
| |
|
|| ||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| || ||| ||| |
|
|
| T |
41127334 |
agttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagag |
41127433 |
T |
|
| Q |
235 |
gg---cggccatgttgatttgtcggaaaaagatgaattcac |
272 |
Q |
| |
|
|| || |||||||||||||||||||| ||||||||| |
|
|
| T |
41127434 |
ggagctggttatgttgatttgtcggaaaaaactgaattcac |
41127474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 26494893 - 26494992
Alignment:
| Q |
109 |
aaagagataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |||||||| | ||| || || |||||||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
26494893 |
aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt |
26494992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 26506923 - 26506966
Alignment:
| Q |
112 |
gagataaagatgatgccgtttggagctggaaggagaatttgtcc |
155 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
26506923 |
gagataaagatgatgccatttggagcaggaaggaggatttgtcc |
26506966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 55017070 - 55017133
Alignment:
| Q |
92 |
ttgatattacagggagtaaagagataaagatgatgccgtttggagctggaaggagaatttgtcc |
155 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
55017070 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
55017133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 15176408 - 15176356
Alignment:
| Q |
103 |
gggagtaaagagataaagatgatgccgtttggagctggaaggagaatttgtcc |
155 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
15176408 |
gggagtaaagagataaagatgatgccatttggagcagggaggagaatgtgtcc |
15176356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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