View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_high_7 (Length: 506)
Name: NF4124_high_7
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 17503362 - 17502898
Alignment:
| Q |
1 |
tgatgacacactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttggtcgataagccattagggtgggtggttgacaaggt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17503362 |
tgatgacacactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttggtcgataagccattagggtgggtggttgacgaggt |
17503263 |
T |
|
| Q |
101 |
tcgcgagtttgtgtcagtatcaacaactgaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
200 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17503262 |
tcgcgagtttgtgtcagtagcaacaactgaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
17503163 |
T |
|
| Q |
201 |
agtggtggcaccaatgaagggccggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtttttgcat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17503162 |
agtggtggcaccaatgaagggccggcttttgtggtatcttccgggcaaagatttccggaagacaaggtggattttggatggggaaaagttgtgtttgcat |
17503063 |
T |
|
| Q |
301 |
cctaccattttccttggggaggtgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgggttgtttacatgcatcttttgaaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17503062 |
cctaccattttccttggggaggtgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgggttgtttacatgcatcttttgaaaga |
17502963 |
T |
|
| Q |
401 |
gcaattggacaccatagagtctgaggcagatcatgtctttatgcctttgacttgggattatctca |
465 |
Q |
| |
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| T |
17502962 |
gcaattggacatcatagagtctgaggcagatcatgtctttatgcctttgacttgggattatctca |
17502898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 17475248 - 17474784
Alignment:
| Q |
1 |
tgatgacacactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttggtcgataagccattagggtgggtggttgacaaggt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
17475248 |
tgatgacccactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttgatcgataagccattagggtgggtggttgataaggt |
17475149 |
T |
|
| Q |
101 |
tcgcgagtttgtgtcagtatcaacaactgaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
200 |
Q |
| |
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||| |||||||| || ||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
17475148 |
tcgtgagtttgtatcggtagcaacaacggaggagcacttcttagggctcattgactgggtggaagcacaccgacctgtacctggattgacgaagatttat |
17475049 |
T |
|
| Q |
201 |
agtggtggcaccaatgaagggccggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtttttgcat |
300 |
Q |
| |
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|||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17475048 |
tgtggcgaccccaatgaagggccggcttttgtggtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtgtttgcat |
17474949 |
T |
|
| Q |
301 |
cctaccattttccttggggaggtgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgggttgtttacatgcatcttttgaaaga |
400 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||| |
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| T |
17474948 |
cctaccattttccatggggtggtgaaactggttatgtgatgccaatgccaagccctttaaggaatggtgattggattgtttatatgcatctttcaaaaga |
17474849 |
T |
|
| Q |
401 |
gcaattggacaccatagagtctgaggcagatcatgtctttatgcctttgacttgggattatctca |
465 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17474848 |
gcaattggagatcatagagtccgaggcagatcatgtctttaagcctttgacttgggattatctca |
17474784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 129 - 374
Target Start/End: Complemental strand, 39543403 - 39543152
Alignment:
| Q |
129 |
gaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcaccaatg------aagggc |
222 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||| |||||||| |||||||||||||| | ||||||| |||| |||| || |||| | |
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| T |
39543403 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggac |
39543304 |
T |
|
| Q |
223 |
cggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtttttgcatcctaccattttccttggggagg |
322 |
Q |
| |
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| | ||||| |||||||| ||||| || |||||||| ||||| |||||||||||||| || ||| |||| ||| || ||||||||||||||||| |
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| T |
39543303 |
caacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggagg |
39543204 |
T |
|
| Q |
323 |
tgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgg |
374 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
39543203 |
tagtgctggctatgttatgccaatgccaagccctaaaaggaatggtgattgg |
39543152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 129 - 374
Target Start/End: Complemental strand, 39553422 - 39553171
Alignment:
| Q |
129 |
gaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcaccaatg------aagggc |
222 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||| |||||||| |||||||||||||| | ||||||| |||| |||| || |||| | |
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| T |
39553422 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggac |
39553323 |
T |
|
| Q |
223 |
cggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtttttgcatcctaccattttccttggggagg |
322 |
Q |
| |
|
| | ||||| |||||||| ||||| || |||||||| ||||| |||||||||||||| || ||| |||| ||| || ||||||||||||||||| |
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| T |
39553322 |
caacatttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggagg |
39553223 |
T |
|
| Q |
323 |
tgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgg |
374 |
Q |
| |
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| ||||| ||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
39553222 |
tagtgctggctatgttatgccaatgccaagccctaaaaggaatggtgattgg |
39553171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 39586523 - 39586458
Alignment:
| Q |
135 |
catttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
200 |
Q |
| |
|
|||||||| || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| |
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|
| T |
39586523 |
catttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttat |
39586458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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