View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_high_8 (Length: 504)
Name: NF4124_high_8
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Complemental strand, 40545289 - 40544815
Alignment:
| Q |
12 |
agagagagagtttgaatcttatcaagggttttaacaaaacttttgaatcacatcaaagtgttacaaaacatataattcttgaatcgtattaagtgttact |
111 |
Q |
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| T |
40545289 |
agagagagagtttgaatcttatcaagggttttaacaaaacttttgaatcacatcaaagtgttacgaaacatataattcttgaatcgtattaagtgttact |
40545190 |
T |
|
| Q |
112 |
tgaagtgatcataacaacccaaaggcttgaataatacaatgcatgccaagcttgaatcaatttaaacgaccaaaaatgcaattttaaagacttgactcac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40545189 |
tgaagtgatcataacaacccaaaggcttgaataatacaatgcatgccaagcttgaatcaatttaaacgaccaaaaatgcaattttaaagacttaactcac |
40545090 |
T |
|
| Q |
212 |
aagaaaacacctaaacacaattttaaacaaatgacactaatatagttgacttgagatcagagattggttaaggtgctttcacaacaaagctaaagaatca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40545089 |
aagaaaacacctaaacacaattttaaacaaatgacactaatatagttgacttgagatcagagattagttaaggtgctttcacaacaaagctaaagaatca |
40544990 |
T |
|
| Q |
312 |
caaacaaaaggtataaataacatctaattaatctaattaaaaacatcatcaaaagtcaaaacccatgctaggagccaatccacaatgatgggctaaaaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40544989 |
caaacaaaaggtataaataacatctaattaatctaattaaaaacatcatcaaaagtcaaaacccatactaggagccaatccacaatgatgggctaaaaac |
40544890 |
T |
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| Q |
412 |
aaacttagccaaaatcattctccttgatctacttaaaatcccaacttcgcaaccagctagccttgggttattcat |
486 |
Q |
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| T |
40544889 |
aaacttagccaaaatcattccccttgatctacttaaaatcccaacttcgcaaccagctagccttgggttgttcat |
40544815 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 11883240 - 11883339
Alignment:
| Q |
198 |
aagacttgactcacaagaaaacacctaaacacaattttaaacaaatgacactaatatagttgacttgagatcagagattggttaaggtgctttcacaaca |
297 |
Q |
| |
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||||||||| |||||| ||||| |||||||||||||||| || ||||||||||| ||| || |||||||| |||||| ||||||| |||| ||||| |
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| T |
11883240 |
aagacttgattcacaa-aaaacttctaaacacaattttaa-cacatgacactaatgtagagaacctgagatcatagattgactaaggtgttttcgcaaca |
11883337 |
T |
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