View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_high_9 (Length: 499)
Name: NF4124_high_9
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_high_9 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 33827961 - 33828400
Alignment:
| Q |
12 |
ataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatgatgataatgc |
111 |
Q |
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| T |
33827961 |
ataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatgatgataatgc |
33828060 |
T |
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| Q |
112 |
gtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatcatccggtaatg |
211 |
Q |
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| T |
33828061 |
gtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatcatccggtaatg |
33828160 |
T |
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| Q |
212 |
gctgaaaagttattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaaagaaattaaa |
311 |
Q |
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| T |
33828161 |
gctgaaaaattattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaaagaaattaaa |
33828260 |
T |
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| Q |
312 |
aacttatgtatatcttaatgaaaaaaggatttttgaaggtagatgatcgtggttacaaagcaggactaattatgaattaaaccttcacaactttgatgtc |
411 |
Q |
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| T |
33828261 |
aacttatgtatgtcttaacgaaaaaaggatttttgaaggtagatgatcgtggttacaaagcaggactaattatgaattaaaccttcacaactttgatgtc |
33828360 |
T |
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| Q |
412 |
atttgaggttgccttgtccgccaagatagagtgcaaagta |
451 |
Q |
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| T |
33828361 |
atttgaggttgccttgtccgccaagatagagtgcaaagta |
33828400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 13548213 - 13548262
Alignment:
| Q |
450 |
tactccctctctcccttaatgagtgaactgtttgaaaatgtgcaattttg |
499 |
Q |
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| T |
13548213 |
tactccctccgtcccttaataagtgacctgtttgaaaatgtgcaattttg |
13548262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 38963795 - 38963844
Alignment:
| Q |
450 |
tactccctctctcccttaatgagtgaactgtttgaaaatgtgcaattttg |
499 |
Q |
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| T |
38963795 |
tactccctctgtcccttaataagtgacctgtttgaaaatgtgcaattttg |
38963844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 6142564 - 6142526
Alignment:
| Q |
461 |
tcccttaatgagtgaactgtttgaaaatgtgcaattttg |
499 |
Q |
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| T |
6142564 |
tcccttaataagtgacctgtttgaaaatgtgcaattttg |
6142526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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