View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4124_low_11 (Length: 462)
Name: NF4124_low_11
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Original strand, 50805571 - 50806017
Alignment:
| Q |
7 |
aatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagtaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
50805571 |
aatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacaataat |
50805670 |
T |
|
| Q |
107 |
tnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgccagaaaa |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
50805671 |
taaaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgctagaaaa |
50805770 |
T |
|
| Q |
207 |
ttggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctcatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50805771 |
ttggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctcatt |
50805870 |
T |
|
| Q |
307 |
taagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805871 |
taagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccctt |
50805970 |
T |
|
| Q |
407 |
tttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50805971 |
tttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
50806017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Complemental strand, 50870306 - 50869860
Alignment:
| Q |
7 |
aatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagtaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50870306 |
aatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacaataat |
50870207 |
T |
|
| Q |
107 |
tnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgccagaaaa |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |
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|
| T |
50870206 |
taaaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatacaaaaaaa |
50870107 |
T |
|
| Q |
207 |
ttggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctcatt |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870106 |
ttagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctcatt |
50870007 |
T |
|
| Q |
307 |
taagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870006 |
taagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccctt |
50869907 |
T |
|
| Q |
407 |
tttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50869906 |
tttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
50869860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 160 - 453
Target Start/End: Complemental strand, 13675746 - 13675453
Alignment:
| Q |
160 |
agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13675746 |
agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
13675647 |
T |
|
| Q |
260 |
aacgttctttactgaagatttttcattcgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13675646 |
aacgttctttactgaagatttttcattcaagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt |
13675547 |
T |
|
| Q |
360 |
ggaaaggtttctaagtttcagttattcactgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
453 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13675546 |
ggaaaggtttctaagtttaagttattcactgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
13675453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 160 - 453
Target Start/End: Original strand, 19964973 - 19965266
Alignment:
| Q |
160 |
agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19964973 |
agcatttgtgctagcatttttatatggtttcttggtatcccaaaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
19965072 |
T |
|
| Q |
260 |
aacgttctttactgaagatttttcattcgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965073 |
aacgttctttactgaagatttttcattcgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt |
19965172 |
T |
|
| Q |
360 |
ggaaaggtttctaagtttcagttattcactgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19965173 |
ggaaaggtttctaagtttcagttattcactgttgtagaaattccctttttgtggtgattttggagaagcaaataatgcataatgaggatcattg |
19965266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 19056612 - 19056461
Alignment:
| Q |
11 |
tgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagtaattnnn |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19056612 |
tgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcaatacaataaaatcgccagtaactaacaataatt-aa |
19056514 |
T |
|
| Q |
111 |
nnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagca |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19056513 |
aaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagca |
19056461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 43021186 - 43021288
Alignment:
| Q |
160 |
agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
259 |
Q |
| |
|
||||||| | |||||| |||||||||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
43021186 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaatggtagtagtgcagaaacgaatat |
43021285 |
T |
|
| Q |
260 |
aac |
262 |
Q |
| |
|
||| |
|
|
| T |
43021286 |
aac |
43021288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 40704913 - 40704837
Alignment:
| Q |
8 |
atatgtaaaatgagtgtatacattctaataaaattc-cttttttccctcatctcatgcatcaaaatcactacaataa |
83 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
40704913 |
atatgtaaaatgagtgtatatattctaataaaattcatttttttccttcatctcatgaatagaaatcactacaataa |
40704837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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