View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_14 (Length: 422)
Name: NF4124_low_14
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 43920904 - 43920498
Alignment:
| Q |
1 |
tgttaaaaaatcctacctatgttaagctttgttatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920904 |
tgttaaaaaatcctacctatgttaagctttgctatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaa |
43920805 |
T |
|
| Q |
101 |
aactttgtccaatctctatgacatgattattttaaattttttaatctaatattgggtttattaggatcatagttatagacttatatagaatttatttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920804 |
aactttgtccaatctctatgacatgattattttaaattttttaatctaatattaggtttattaggatcatagttatagacttatatagaatttatttata |
43920705 |
T |
|
| Q |
201 |
tggctcttcgtgtaggtacttcttggagacatgggaacaggaaagactagtttagcattaagatttgttaaaggccagttctttcagaatcaggtttact |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920704 |
tggctcttcttgtaggtacttcttggagacatgggaacaggaaagactagtttagcattaagatttgttaaaggccagttctttcagaatcaggtttact |
43920605 |
T |
|
| Q |
301 |
tccattttatatcaataaatgaaatatacnnnnnnnaattaatattattattattaacagagtttagtaaccttcatataaattaatgtacacataggaa |
400 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43920604 |
tccatttcatatcaataaatgaaatatactttttttaattaatattattattattaacagagtttagcaaccttcatataaattaatgtacacataggaa |
43920505 |
T |
|
| Q |
401 |
ccaacca |
407 |
Q |
| |
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||||||| |
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| T |
43920504 |
ccaacca |
43920498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 23714969 - 23714881
Alignment:
| Q |
37 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
126 |
Q |
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| T |
23714969 |
catagccggtcccaagtccaggtaaaagaagagggttgtgttagacttgagca-attaacgtaaaactttatctaatccctatgacatga |
23714881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 24102641 - 24102553
Alignment:
| Q |
37 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
126 |
Q |
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| T |
24102641 |
catagccggtcccaagtccaggtaaaagaagagggttgtgttagacttgagca-attaacgtaaaactttatctaatccctatgacatga |
24102553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 2793070 - 2793138
Alignment:
| Q |
57 |
ggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
126 |
Q |
| |
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|||||||||||| |||| |||||| |||| |||||||| | |||||||||||||||| |||||||||||| |
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| T |
2793070 |
ggtaaaaggagacggttatgttaagcttgggcagcaaa-cataaaactttgtccaatatctatgacatga |
2793138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 26916275 - 26916327
Alignment:
| Q |
28 |
tttgttatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgttaa |
80 |
Q |
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|||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
26916275 |
tttgttatgcatagccggtcccaagcccaggtagaaggagagggttgtgttaa |
26916327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 26916218 - 26916268
Alignment:
| Q |
28 |
tttgttatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgtt |
78 |
Q |
| |
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|||| ||||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
26916218 |
tttgctatgcatagccggtcccaagcccaggtaaacggagagggttgtgtt |
26916268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 39668868 - 39668780
Alignment:
| Q |
37 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
126 |
Q |
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||||||||||| || ||| ||||||||| ||||||||||||| | | |||| || |||||||||||||| |||||||||||||||| |
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| T |
39668868 |
catagccggtcccaagcccgggtaaaaggtgagggttgtgttagtcctcgacagccaa-cgtaaaactttgtcgaatctctatgacatga |
39668780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 36915398 - 36915440
Alignment:
| Q |
37 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgtta |
79 |
Q |
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||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
36915398 |
catagccggtccaaagcccagataaaaggagagggttgtgtta |
36915440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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