View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4124_low_15 (Length: 408)
Name: NF4124_low_15
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 9670214 - 9670383
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9670214 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
9670313 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9670314 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
9670383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 9676748 - 9676917
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9676748 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatacaca |
9676847 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9676848 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
9676917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 40464490 - 40464659
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40464490 |
tgttaggaaatatctatcttatgcatagttgactctctttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatacaca |
40464589 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40464590 |
gtaaattagatcccactgattgaggatcatggatgtcatgacttaggattagcttaacatacgtctgtaa |
40464659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 11075641 - 11075717
Alignment:
| Q |
229 |
ttattttcctttcaatgcacagtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagctta |
305 |
Q |
| |
|
||||||||||||||||| | | ||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
11075641 |
ttattttcctttcaatgtataataaatcagatcccactgattgagtatcattgctgtcatgccttagaattagctta |
11075717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 11050165 - 11050111
Alignment:
| Q |
251 |
taaattagatcccactgattgaggatcatggctgtcatgacttaggattagctta |
305 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
11050165 |
taaatcagatcccactgattgaggatcatgactgtcatgccttagaattagctta |
11050111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 401
Target Start/End: Original strand, 40464709 - 40464739
Alignment:
| Q |
371 |
cacaaaattctattccaaattgttcttctca |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40464709 |
cacaaaattctattccaaattgttcttctca |
40464739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 150 - 319
Target Start/End: Complemental strand, 38592568 - 38592399
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38592568 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
38592469 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38592468 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
38592399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 150 - 319
Target Start/End: Complemental strand, 38596164 - 38595995
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38596164 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
38596065 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38596064 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
38595995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 25064941 - 25065110
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25064941 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
25065040 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25065041 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
25065110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 25127619 - 25127788
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25127619 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
25127718 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25127719 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
25127788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 25069643 - 25069813
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcc-tttcaatgcac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25069643 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagttattttccttttcaatgcac |
25069742 |
T |
|
| Q |
249 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25069743 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
25069813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 13541238 - 13541407
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13541238 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
13541337 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13541338 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
13541407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 13541692 - 13541861
Alignment:
| Q |
150 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatgcaca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13541692 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttattttcctttcaatacaca |
13541791 |
T |
|
| Q |
250 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13541792 |
gtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaa |
13541861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 24890507 - 24890637
Alignment:
| Q |
19 |
ccttgctaacaccagttatcatcactgtttgatttccatcactccttcctattccaactcccatttcgatccctttacctctacctttctcactgccact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890507 |
ccttgctaacaccagttatcatcactgtttgatttccatcactccttcctattccaactcccatttcgatccctttacctctacctttctcactgccact |
24890606 |
T |
|
| Q |
119 |
accaaccatctccaatccaattattcttcca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24890607 |
accaaccatctccaatccaattattcttcca |
24890637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 26562561 - 26562433
Alignment:
| Q |
21 |
ttgctaacaccagttatcatcactgtttgatttccatcactccttcctattccaactcccatttcgatccctttacctctacctttctcactgccactac |
120 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | ||||| |||||||||| ||| ||||| |||||||| |||| ||| |||||| | |||||| |
|
|
| T |
26562561 |
ttgctaacaccagttatcatcactgttcgatttcctttgctcctccctattccaattccaatttcaatcccttttcctccgcctctctcaccgtcactac |
26562462 |
T |
|
| Q |
121 |
caaccatctccaatccaattattcttcca |
149 |
Q |
| |
|
||||||| ||| |||||||| |||||||| |
|
|
| T |
26562461 |
caaccatttcctatccaattcttcttcca |
26562433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 26561068 - 26561178
Alignment:
| Q |
39 |
atcactgtttgatttccatcactccttcctattccaactcccatttcgatccctttacctctacctttctcactgccactaccaaccatctccaatccaa |
138 |
Q |
| |
|
|||||| || ||||||| |||||||| |||||| ||| |||||||||||||||||| |||| ||| | |||| | |||||||| |||||| |||||||| |
|
|
| T |
26561068 |
atcactattcgatttccttcactcctccctatttcaattcccatttcgatcccttttcctccgcctctatcaccgtcactaccagccatcttcaatccaa |
26561167 |
T |
|
| Q |
139 |
ttattcttcca |
149 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26561168 |
ttcttcttcca |
26561178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 26253491 - 26253601
Alignment:
| Q |
199 |
atatttaccttctctaatagttaactctagttattttcctttcaatgcacagtaaattagatcccactgattgaggatcatggctgtcatgacttaggat |
298 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||| |||| ||||||| |||||||| |
|
|
| T |
26253491 |
atatttaccttctctaaaagttgactctagttattttcctttcaatacacaagaaattagatcccattgattgaagattatggttgtcatgccttaggat |
26253590 |
T |
|
| Q |
299 |
tagcttaacat |
309 |
Q |
| |
|
||||||||||| |
|
|
| T |
26253591 |
tagcttaacat |
26253601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University