View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_16 (Length: 405)
Name: NF4124_low_16
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 42 - 387
Target Start/End: Original strand, 35354339 - 35354703
Alignment:
| Q |
42 |
tacttaatatttctagagctttta-----cagaatgtgtttagctatttacaacattcggtttattctagaaatgaaggaaaatgtgagaaagcaagaag |
136 |
Q |
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| T |
35354339 |
tacttaatatttctagagcttttatattacagaatgtgtttagctatttacaacattcggttttttctagaaatgaaggaaaatgtgagaaagcaagaag |
35354438 |
T |
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| Q |
137 |
aaactaaccatctttggtgtttgacgatttccttgaatagatttctcatcaagcagaaagttgatggtggcatattgcaatttcatctttttacagtact |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354439 |
aaactaaccatctttggtgtttgacgatttccttgaatagatttctcatcaagcagaaagttgatggtggcatattgcaatttcatctttttacagtact |
35354538 |
T |
|
| Q |
237 |
gttgaaatgctgttatcaagaacttgtcctggttcactttgaaatgctgctcattcccatcctacattttaatgaacaaaagcacttattgtgtgtttgg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354539 |
gttgaaatgctgttatcaagaacttgtcctggttcactttgaaatgctgctcattcccatcctacattttaatgaacaaaagcacttattgtgtgtttgg |
35354638 |
T |
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| Q |
337 |
attcatgcaacaaaa--------------agagtgatgcatatatacatacctgacccctgattc |
387 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35354639 |
attcatgcaacaaaaagaagcaatgaaaaagagtgatgcatatatacatacctgacccctgattc |
35354703 |
T |
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