View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_19 (Length: 347)
Name: NF4124_low_19
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 9639284 - 9639607
Alignment:
| Q |
1 |
gctattgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataattcctgcaagttttaacataaatacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9639284 |
gctattgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataattcctgcaagttttaacataaatatctt |
9639383 |
T |
|
| Q |
101 |
gtaaaacacagatattgattagtaacannnnnnnngcctttggtaacaacaaatgttatctaataagacttaccatgccagcaagttgagagacatccat |
200 |
Q |
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|||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639384 |
gtaaaacacagatatt----agtaacattttttt-gcctttggcaacaacaaatgttatctaataagacttaccatgccagcaagttgagagacatccat |
9639478 |
T |
|
| Q |
201 |
gaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctgcttatttatgtcagnnnnnnntgatggtagaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
9639479 |
gaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctgcttatttatgtcagaaaaaaatggtggtagaagt |
9639578 |
T |
|
| Q |
301 |
ccatcccttgccatagccatcaaaattct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
9639579 |
ccatcccttgccatagccatcaaaattct |
9639607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 166 - 329
Target Start/End: Original strand, 9648566 - 9648729
Alignment:
| Q |
166 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctct |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
9648566 |
agacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcagcaacaaggccggtaactatggtactctttacaggaacatggctgt |
9648665 |
T |
|
| Q |
266 |
gcttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattct |
329 |
Q |
| |
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|||||||||| |||| || ||| || | ||| |||||||||||||||||||||||||| |
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| T |
9648666 |
gcttatttatatcagaaaaaaatggtggcagcaatccgtcccttgccatagccatcaaaattct |
9648729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 166 - 329
Target Start/End: Original strand, 9654583 - 9654746
Alignment:
| Q |
166 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
9654583 |
agacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcagcaacaaggccggtaactatggtactctttacaggaacatggctgt |
9654682 |
T |
|
| Q |
266 |
gcttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattct |
329 |
Q |
| |
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|||||||||| |||| || ||| || | ||| |||||||||||||||||||||||||| |
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| T |
9654683 |
gcttatttatatcagaaaaaaatggtggcagcaatccgtcccttgccatagccatcaaaattct |
9654746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 166 - 325
Target Start/End: Original strand, 9628482 - 9628641
Alignment:
| Q |
166 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctct |
265 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||| |||||||| ||||| | |
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| T |
9628482 |
agacttaccatcccagcaagttgagagacatccatgaaaaaagccaaggctgcaggaacaaggccagtgactatggtactcttaacaggaacatggctgt |
9628581 |
T |
|
| Q |
266 |
gcttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaa |
325 |
Q |
| |
|
|||||||||| |||| || ||| || ||||||||||||||||| |||||||||| |
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|
| T |
9628582 |
gcttatttatttcagagaaaaatggtggcagtagtccatcccttgccattgccatcaaaa |
9628641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 178 - 329
Target Start/End: Original strand, 9614663 - 9614814
Alignment:
| Q |
178 |
ccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctgcttatttatgt |
277 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||| || ||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
9614663 |
ccagaaagttgagagacatccatgaaaaatgccaaggctgcaggaacaaggccagtgacaatggtactcttaacaggaacatggctgtgcttatttatgt |
9614762 |
T |
|
| Q |
278 |
cagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattct |
329 |
Q |
| |
|
||| || ||| | |||||||||||||||||||||||||||||||| |
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| T |
9614763 |
cagaaaaaaatggtggcaatagtccatcccttgccatagccatcaaaattct |
9614814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 9613798 - 9613859
Alignment:
| Q |
3 |
tattgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattag |
64 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
9613798 |
tattgtgaatgcaataagagtgcctacactaacctgtagaagacaagcaaaataaacattag |
9613859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 9627970 - 9628036
Alignment:
| Q |
6 |
tgtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataa |
72 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || |||| |||| |||||||||||||||||| |
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|
| T |
9627970 |
tgtgaatgcaataagagtgcctacactaacctgtaaaatacaaacaaaataaacattagtactataa |
9628036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 9648326 - 9648392
Alignment:
| Q |
7 |
gtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataat |
73 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| ||||||||| || || ||||||||||||| |
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|
| T |
9648326 |
gtgaatgcaagaagagtaccaacactaacctgtagaagacaagcaaaatacactttagtactataat |
9648392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 9654343 - 9654409
Alignment:
| Q |
7 |
gtgaatgcaagaagagtgcctacactaacctgtagaacacaagcaaagtaaacattagtactataat |
73 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| ||||||||| || || ||||||||||||| |
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|
| T |
9654343 |
gtgaatgcaagaagagtaccaacactaacctgtagaagacaagcaaaatacactttagtactataat |
9654409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 328
Target Start/End: Complemental strand, 33644659 - 33644498
Alignment:
| Q |
167 |
gacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctg |
266 |
Q |
| |
|
|||||||||| || ||||| | |||||| ||||| |||| || ||| ||||||| | ||||| |||| ||| || | ||| ||||||||| | | || |
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| T |
33644659 |
gacttaccatccctgcaagatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtg |
33644560 |
T |
|
| Q |
267 |
cttatttatgtcagnnnnnnntgatggtagaagtccatcccttgccatagccatcaaaattc |
328 |
Q |
| |
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||||||||||||| || ||| || ||||||||||||||||||||||||||||||| |
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|
| T |
33644559 |
cttatttatgtcacaaaaaaatggtggcagtagtccatcccttgccatagccatcaaaattc |
33644498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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