View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_2 (Length: 862)
Name: NF4124_low_2
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 688; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 13 - 843
Target Start/End: Complemental strand, 37200341 - 37199531
Alignment:
| Q |
13 |
acctgtgttcaagttatctgttaatctgtggtgtactgatttggaagaattttcagtttcttagttttgtgtattggggctgctctattgttttgtttat |
112 |
Q |
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| T |
37200341 |
acctgtgttcaagttatctgttaatctgcggtgtactgatttggaagaattttcagtttcttagttttgtgtattggggctgctctattgttttgtttat |
37200242 |
T |
|
| Q |
113 |
aacatcaattagttgaagggttgcctttgaggttttggggtgatatgaaggttttgtttnnnnnnnnnnnnnnnnnncatatgtatgcataaatgtgcac |
212 |
Q |
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| T |
37200241 |
aacatcaattagttgaagggttgcctttgaggttttggggtgatatgaaggtgttgtttaaaaactaaatataaaaacatatgtatgcataaatgtgcac |
37200142 |
T |
|
| Q |
213 |
atatgtatcaaccttgatttacattagacatgtatcatgtcttttcagtattgaaggatatgtgaatgcaggtaacaagataagttttacaagaccaaaa |
312 |
Q |
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| T |
37200141 |
atatgtatcaaccttgatttacattagacatgtatcatgtcttttcagtattgaaggatatgtgaatgcaggtaacaaggtaagttttacaagaccaaaa |
37200042 |
T |
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| Q |
313 |
tatgcaagttgtgttttcgataggatataacaagattacaataaccaatgctcaccataccgtctgtgttttgttacaacagccaagtagataactagca |
412 |
Q |
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| T |
37200041 |
tatgcaagttgtgttttcgacaggatataacaagattacaataaccaatgctcaccatatcgtctgtgttttgttacaacagccaagtagataactagca |
37199942 |
T |
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| Q |
413 |
agcataagataaaaactcttcacctacaatgcccaaaatgagaagactaagatatctatctgttgaagaaactttaacaaagtaaacaatgaatttaatt |
512 |
Q |
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| T |
37199941 |
agcataagataaaaactcttcacctacaatgcccaaaatgagaagactaagatatctatctgttgaagaaactttaacaaagtaaacaatgaatttaatt |
37199842 |
T |
|
| Q |
513 |
atgagtttatggaataaaaccaaccaattgtagataaaacttgtccaatgtggagcttcagcttctacaatatagttgttttccataggatgatggttgc |
612 |
Q |
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| T |
37199841 |
atgagtttatggaata--------------------aaacttgtccaatgtggagcttcagcttctacaatatagttgttttccataggatgatggttgc |
37199762 |
T |
|
| Q |
613 |
tacatagaaacactattttcttataaaaagaaaacttgacatttgacaccgatttcccttaatcactagtgtgaaatgtcaaaattataacgtaaccaca |
712 |
Q |
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| T |
37199761 |
tacatagaaacactattttcttataaaaagaaaacttgacatttgacaccgatttcccttaatcactagtgtgaaatgttaaaattataacgtaaccaca |
37199662 |
T |
|
| Q |
713 |
tataactttttaaattataacattcaacttggttttgagagaaataggtttacataagcaagaaacggaggttaaatcccacttgtccagataaacaaca |
812 |
Q |
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| T |
37199661 |
tataactttttaaattataacattcaacttggttttgagagaaataggtttacataagcaagaaacggaggttaaatcccacttgtccagataaacaaca |
37199562 |
T |
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| Q |
813 |
agaaacagagttttacaatagatggtagagt |
843 |
Q |
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| T |
37199561 |
agaaacagagttttacaatagatggtagagt |
37199531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 466 - 595
Target Start/End: Complemental strand, 37216197 - 37216059
Alignment:
| Q |
466 |
atctatctgttgaagaaactttaacaaagtaaacaatgaatttaattatgagtttatggaataaaaccaaccaatt---------gtagataaaacttgt |
556 |
Q |
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||||||||||| ||||| || ||||| | |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
37216197 |
atctatctgtttgagaaatttcaacaatggaaacaatgaatttaattacgagtttatggaataaaatccaccaattgtaggagcagtagataaaacttgt |
37216098 |
T |
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| Q |
557 |
ccaatgtggagcttcagcttctacaatatagttgttttc |
595 |
Q |
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| T |
37216097 |
ccaatgtggagcttcagcttgtaaactatagttgttttc |
37216059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 37214055 - 37213972
Alignment:
| Q |
450 |
atgagaagactaagatatctatctgttgaagaaactttaacaaagtaaacaatgaatttaattatgagtttatggaataaaacc |
533 |
Q |
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|||||||||| | |||| |||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37214055 |
atgagaagaccgacatatttatctgtttaagaaaaatttacaaaggaaacaatgaatttaattatgagtttatggaataaaacc |
37213972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 37216305 - 37216268
Alignment:
| Q |
395 |
ccaagtagataactagcaagcataagataaaaactctt |
432 |
Q |
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| T |
37216305 |
ccaagtagataactagcaagcataagctaaaaactctt |
37216268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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