View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_21 (Length: 308)
Name: NF4124_low_21
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 8868749 - 8868481
Alignment:
| Q |
18 |
aaatccatattctaacgccttgcgaataacatcataagaaacgacttcatttccttgcaagtttctcaaccaagacgttggagtaactaacatcacatga |
117 |
Q |
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| T |
8868749 |
aaatccatattctaacgccttgcgaataacatcataagaaaccacttcatttccttgcaagtttctcaaccaagacgttggagtaaccaacatcacatga |
8868650 |
T |
|
| Q |
118 |
caaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaattgagacatgaagaagtatcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
8868649 |
caaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataatacccttgggatttagagctccaattgagacatgaagaaatattca |
8868550 |
T |
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| Q |
218 |
catatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaagatgggcat |
286 |
Q |
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| T |
8868549 |
catatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaagatgggcat |
8868481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 86 - 285
Target Start/End: Complemental strand, 8864433 - 8864234
Alignment:
| Q |
86 |
accaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggattt |
185 |
Q |
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| T |
8864433 |
accaagaagttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataataccctttggattt |
8864334 |
T |
|
| Q |
186 |
agagctccaattgagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaagatgggca |
285 |
Q |
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| T |
8864333 |
ggagttcaaattcagacatgaagaagtattcacatatttaggactgttagtcacttgatggctgcaattcaagtaaactatatgctcaaaaagaagggca |
8864234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 9100198 - 9099937
Alignment:
| Q |
18 |
aaatccatattctaacgccttgcgaataacatcataagaaacgacttcatttccttgcaagtttctcaaccaagacgttggagtaactaacatcacatga |
117 |
Q |
| |
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|||||||||| |||||||||| |||| | |||||| |||| |||| ||||| |||||| |||| |||||| || || |||| |||||| || ||||| |
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| T |
9100198 |
aaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaatttcccaaccatgaagtgggagccactaacttcgcatga |
9100099 |
T |
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| Q |
118 |
caaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaattgagacatgaagaagtatcaa |
217 |
Q |
| |
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| T |
9100098 |
caaccaacttgaaaatcttgagcaactaatttaccagcaatagcataaatataataccctttggatttggagttcgaattaaggcaagatgaagcattca |
9099999 |
T |
|
| Q |
218 |
catatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaaga |
279 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
9099998 |
catatttatgattgttaatcacttgatgagtacaattcatgtaaactatatgctcaaaaaga |
9099937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 279
Target Start/End: Original strand, 8971932 - 8972124
Alignment:
| Q |
84 |
caaccaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggat |
183 |
Q |
| |
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|||| |||| ||||||||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | |||||| |
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| T |
8971932 |
caacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataattacttttggag |
8972031 |
T |
|
| Q |
184 |
ttagagctccaatt-gagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaaga |
279 |
Q |
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| | | |||| || ||| |||||||||| ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
8972032 |
taa----ccaaattggaaacaggaagaagtattcacatatttaggattgttagttacttgatgggtacaattcaagtaaactatatgcttaaaaaga |
8972124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 279
Target Start/End: Original strand, 9006960 - 9007152
Alignment:
| Q |
84 |
caaccaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggat |
183 |
Q |
| |
|
|||| |||| ||||||||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | |||||| |
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| T |
9006960 |
caacaaagatgttggagtaaccaatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataattacttttggag |
9007059 |
T |
|
| Q |
184 |
ttagagctccaatt-gagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaaga |
279 |
Q |
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| | | |||| || ||| |||||||||| ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
9007060 |
taa----ccaaattggaaacaggaagaagtattcacatatttaggattgttagttacttgatgggtacaattcaagtaaactatatgcttaaaaaga |
9007152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 9136816 - 9136720
Alignment:
| Q |
86 |
accaagacgttggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttgga |
182 |
Q |
| |
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||||||| ||| |||||||| | |||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
9136816 |
accaagaagttagagtaactgatttcacatgacagccaacttgaaaatcttgagcaactaaatcaccagccatagcataaatagaataccctttgga |
9136720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 277
Target Start/End: Complemental strand, 9093723 - 9093565
Alignment:
| Q |
110 |
tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaattgagacatgaaga |
209 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||||||||| | || |||||||||| ||| |||||||| ||||| |
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| T |
9093723 |
tcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa---agtagcctttggattgcgag------ttgagacaggaaga |
9093633 |
T |
|
| Q |
210 |
agtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaa |
277 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||| ||||||| | ||| |||||||||| ||||| |
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|
| T |
9093632 |
agtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaa |
9093565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 9072570 - 9072447
Alignment:
| Q |
110 |
tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctcc-aattgagacatgaag |
208 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||| || |||||| ||||||||||||||||| ||||| ||||| || |||| | ||||||| |||| |
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| T |
9072570 |
tcacatgacaaccaacttgtaaatcttcagcagttatatgaccagctatagcataaatataatagccttttgatttgga-ctcctgagtgagacaggaag |
9072472 |
T |
|
| Q |
209 |
aagtatcaacatatttaggattgtt |
233 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
9072471 |
aagtattcacatatttaggattgtt |
9072447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 275
Target Start/End: Original strand, 9065209 - 9065387
Alignment:
| Q |
97 |
ggagtaactaacatcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataataccctttggatttagagctccaat |
196 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| || ||||| ||||||||||| | |||||||||||||||| ||||||||||| ||| | || |
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| T |
9065209 |
ggagtaaccaatttcacatgacaaccaacttgaaagtcctcagccgttaaatcaccaactatagcataaatataattgcctttggatttggagtgtcgat |
9065308 |
T |
|
| Q |
197 |
tgagacatgaagaagtatcaacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaa |
275 |
Q |
| |
|
||||||| | |||||| ||||| || | |||| | || ||| ||| |||||| ||| |||||||||||||||||| |
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|
| T |
9065309 |
tgagacaaggtgaagtaatcacatagttggaattgctagtgacttgattggtacaactcaggtaaactatatgctcaaa |
9065387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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