View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_25 (Length: 262)
Name: NF4124_low_25
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 43691086 - 43690845
Alignment:
| Q |
17 |
caaagttggcgactgtaaatgtgaatctttatgctgcaaaagacgtgttgatgttgatagcagaggatctcgaagagatagatttggatgcttaactagg |
116 |
Q |
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| T |
43691086 |
caaagttggcgactgtaaatgtgaatctttatgctgcaaaagacgtgttgatgttgatagcagaggatctcgaagagatagatttggatgctgaactagg |
43690987 |
T |
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| Q |
117 |
atttgttaaaccataaacctatatcttaatatgcatgttgatataagtggatttcgatctcttgaatgttttatctcgaaatttttgtaagaaaatatat |
216 |
Q |
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| T |
43690986 |
atttgttaaaccataaacctatatcttaatatgcatgttgatataagtggatttcgatctcttgaatgttttgtctcgaaatttttgtaagaaaatatat |
43690887 |
T |
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| Q |
217 |
tttctggcctaattaacaagtcatttcttatttcctatgctt |
258 |
Q |
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| T |
43690886 |
tttctggcctaattaacaagtcatttcttatttcctttgctt |
43690845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 43696192 - 43696127
Alignment:
| Q |
93 |
gatagatttggatgcttaactaggatt--tgttaaaccataaacctatatcttaatatgcatgttg |
156 |
Q |
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| T |
43696192 |
gatagatctggatgctgaactaggatttgtgtgaaaccataaacctatagccaaatatgcatgttg |
43696127 |
T |
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