View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_26 (Length: 258)
Name: NF4124_low_26
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 20599841 - 20600077
Alignment:
| Q |
15 |
atcaacacctaattttgtgaaaagggtgcttagagaagcgcttggcgacgacattagcgatttcaaactactggtatttgctgttcatgcttttattctt |
114 |
Q |
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| T |
20599841 |
atcaacacctaattttgtgaaaagggtgcttagagaagcacttggcgacgacgttagcgatttcaaactactggtatttgctgttcatgcttttattctt |
20599940 |
T |
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| Q |
115 |
gaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtagctctcatcttattgatgacatgtcttcttcttcagtgatatccttgaggt |
214 |
Q |
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| T |
20599941 |
gaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttattgatgacatgtcttcttcttcaatgatatccttgaggt |
20600040 |
T |
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| Q |
215 |
acactcttccttagattcttactaatggttcatctca |
251 |
Q |
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| T |
20600041 |
atactcttcctgagattcttactaatggttcatctca |
20600077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 6133661 - 6133897
Alignment:
| Q |
15 |
atcaacacctaattttgtgaaaagggtgcttagagaagcgcttggcgacgacattagcgatttcaaactactggtatttgctgttcatgcttttattctt |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6133661 |
atcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattctt |
6133760 |
T |
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| Q |
115 |
gaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtagctctcatcttattgatgacatgtcttcttcttcagtgatatccttgaggt |
214 |
Q |
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| T |
6133761 |
gaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttatagatgacatgtcttcttcttcaatgatatgtttgaggt |
6133860 |
T |
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| Q |
215 |
acactcttccttagattcttactaatggttcatctca |
251 |
Q |
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| T |
6133861 |
atactcttcctgagattcttactaatggttcacctca |
6133897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 47945036 - 47944888
Alignment:
| Q |
49 |
gaagcgcttggcgacgacattagcgatttcaaactactggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcag |
148 |
Q |
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| T |
47945036 |
gaagcgcttggtgatgatgttagtgatttgaagctgttggtgtttgcggttcatgctgttattcttgaatctgggtttgttcgtgtggacgaggtttcgg |
47944937 |
T |
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| Q |
149 |
gtatggctatcagtagctctcatcttattgatgacatgtcttcttcttc |
197 |
Q |
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| T |
47944936 |
gtatggcgattagttgctctaatcttgttgatgatatgtcttcttcttc |
47944888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 47944862 - 47944801
Alignment:
| Q |
190 |
tcttcttcagtgatatccttgaggtacactcttccttagattcttactaatggttcatctca |
251 |
Q |
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| T |
47944862 |
tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctca |
47944801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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