View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4124_low_29 (Length: 234)

Name: NF4124_low_29
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4124_low_29
NF4124_low_29
[»] chr6 (15 HSPs)
chr6 (40-202)||(32533043-32533205)
chr6 (32-203)||(18015716-18015887)
chr6 (42-191)||(29321305-29321454)
chr6 (32-197)||(18671998-18672162)
chr6 (42-192)||(11298573-11298723)
chr6 (48-161)||(15117238-15117351)
chr6 (40-175)||(5667344-5667479)
chr6 (43-126)||(11324501-11324584)
chr6 (62-110)||(17292767-17292815)
chr6 (42-102)||(18673422-18673482)
chr6 (42-125)||(32196798-32196881)
chr6 (40-86)||(1767143-1767189)
chr6 (64-126)||(12688221-12688283)
chr6 (40-126)||(27105305-27105391)
chr6 (40-126)||(27147114-27147200)
[»] chr1 (18 HSPs)
chr1 (19-203)||(45718290-45718473)
chr1 (40-201)||(5411698-5411859)
chr1 (32-203)||(12688135-12688306)
chr1 (42-192)||(48973619-48973769)
chr1 (46-191)||(28442130-28442275)
chr1 (41-161)||(28400494-28400614)
chr1 (71-126)||(5958336-5958391)
chr1 (62-133)||(44675122-44675193)
chr1 (61-126)||(26260785-26260850)
chr1 (32-122)||(50039686-50039773)
chr1 (40-102)||(52251399-52251461)
chr1 (58-133)||(4889477-4889552)
chr1 (40-103)||(52626563-52626626)
chr1 (40-86)||(2653702-2653748)
chr1 (64-126)||(34703485-34703547)
chr1 (41-126)||(6723691-6723776)
chr1 (42-103)||(15259457-15259518)
chr1 (61-89)||(16909036-16909064)
[»] chr4 (24 HSPs)
chr4 (40-203)||(10552595-10552758)
chr4 (42-191)||(54870799-54870948)
chr4 (40-197)||(13137043-13137200)
chr4 (36-192)||(42527317-42527473)
chr4 (46-161)||(11131172-11131287)
chr4 (39-200)||(13157391-13157552)
chr4 (46-203)||(18921869-18922026)
chr4 (42-167)||(37207376-37207501)
chr4 (42-157)||(40153906-40154021)
chr4 (46-161)||(30739504-30739619)
chr4 (43-126)||(52578018-52578101)
chr4 (62-131)||(25130442-25130511)
chr4 (41-172)||(30972368-30972499)
chr4 (40-102)||(13608927-13608989)
chr4 (41-146)||(48336974-48337079)
chr4 (40-108)||(8814052-8814120)
chr4 (41-160)||(12114995-12115114)
chr4 (61-115)||(19846573-19846627)
chr4 (40-86)||(26169221-26169267)
chr4 (64-126)||(29969878-29969940)
chr4 (40-86)||(45637504-45637550)
chr4 (41-126)||(20510427-20510512)
chr4 (58-126)||(9831418-9831486)
chr4 (67-131)||(27270012-27270076)
[»] chr2 (20 HSPs)
chr2 (35-203)||(841522-841690)
chr2 (41-192)||(24739785-24739936)
chr2 (32-203)||(40426897-40427068)
chr2 (35-197)||(38408950-38409112)
chr2 (46-175)||(1997682-1997811)
chr2 (41-103)||(27009255-27009317)
chr2 (41-106)||(37738065-37738130)
chr2 (43-126)||(31640273-31640356)
chr2 (40-131)||(45131105-45131196)
chr2 (42-103)||(8090525-8090586)
chr2 (42-103)||(9420733-9420794)
chr2 (41-182)||(35590202-35590342)
chr2 (61-126)||(40638803-40638868)
chr2 (49-92)||(12606929-12606972)
chr2 (64-110)||(9840816-9840862)
chr2 (40-102)||(18766728-18766790)
chr2 (64-189)||(18948766-18948891)
chr2 (41-110)||(27708166-27708235)
chr2 (41-126)||(44735955-44736040)
chr2 (41-101)||(30505774-30505834)
[»] chr7 (15 HSPs)
chr7 (40-192)||(40616713-40616865)
chr7 (41-192)||(27854850-27855001)
chr7 (40-203)||(38342921-38343084)
chr7 (32-203)||(11884323-11884487)
chr7 (42-161)||(8566753-8566872)
chr7 (46-161)||(34871565-34871680)
chr7 (42-126)||(47543460-47543544)
chr7 (40-102)||(9628257-9628319)
chr7 (40-102)||(35516750-35516812)
chr7 (68-126)||(38153939-38153997)
chr7 (136-203)||(37137292-37137359)
chr7 (41-92)||(42017855-42017906)
chr7 (58-103)||(12092733-12092778)
chr7 (61-126)||(17116403-17116468)
chr7 (41-126)||(41529424-41529509)
[»] chr5 (18 HSPs)
chr5 (40-200)||(7961123-7961283)
chr5 (42-191)||(21041918-21042067)
chr5 (41-190)||(32017964-32018113)
chr5 (46-203)||(7465180-7465337)
chr5 (35-138)||(29994640-29994743)
chr5 (41-126)||(16610602-16610687)
chr5 (67-131)||(39839933-39839997)
chr5 (41-107)||(32252172-32252238)
chr5 (41-89)||(19314983-19315031)
chr5 (41-133)||(26778699-26778791)
chr5 (42-113)||(704496-704567)
chr5 (61-163)||(804398-804500)
chr5 (40-102)||(8006832-8006894)
chr5 (41-126)||(12831493-12831578)
chr5 (41-126)||(12863468-12863553)
chr5 (42-103)||(31706406-31706467)
chr5 (97-161)||(12564929-12564993)
chr5 (42-126)||(27482652-27482736)
[»] chr3 (18 HSPs)
chr3 (41-191)||(19979258-19979408)
chr3 (52-191)||(29542378-29542517)
chr3 (46-191)||(41878661-41878806)
chr3 (42-191)||(53876862-53877011)
chr3 (35-203)||(47160945-47161113)
chr3 (42-191)||(6925920-6926069)
chr3 (41-173)||(22533989-22534122)
chr3 (41-161)||(42806269-42806389)
chr3 (40-161)||(37537207-37537328)
chr3 (40-172)||(23050103-23050235)
chr3 (40-175)||(6894178-6894313)
chr3 (40-197)||(26285145-26285302)
chr3 (39-161)||(45966950-45967072)
chr3 (39-92)||(42674075-42674128)
chr3 (42-126)||(4741033-4741117)
chr3 (67-131)||(25845677-25845741)
chr3 (49-108)||(21408117-21408176)
chr3 (41-126)||(33692880-33692965)
[»] chr8 (16 HSPs)
chr8 (42-203)||(41255018-41255179)
chr8 (41-191)||(7179010-7179160)
chr8 (39-196)||(33191181-33191337)
chr8 (32-192)||(38685728-38685888)
chr8 (35-131)||(10616933-10617029)
chr8 (46-161)||(16489445-16489560)
chr8 (64-126)||(37929141-37929203)
chr8 (46-160)||(38233202-38233316)
chr8 (61-163)||(8462513-8462615)
chr8 (41-126)||(5048520-5048605)
chr8 (42-94)||(39896256-39896308)
chr8 (64-126)||(31686431-31686493)
chr8 (42-102)||(38738483-38738543)
chr8 (35-78)||(32988491-32988534)
chr8 (55-89)||(33282886-33282920)
chr8 (69-133)||(21523887-21523951)
[»] scaffold0225 (1 HSPs)
scaffold0225 (38-167)||(6498-6627)
[»] scaffold0795 (1 HSPs)
scaffold0795 (39-160)||(2158-2279)
[»] scaffold0204 (1 HSPs)
scaffold0204 (41-146)||(24496-24601)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 32533043 - 32533205
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    |||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32533043 aattagcctatgcctcataaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 32533142  T
Q  140 acttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcc 202  Q
    |||||||||| |||||||||| |||||| ||||||| ||| | ||||||||||||||||||||    
T  32533143 acttaatcctatccaccacctacataatagagctatccttagaattaaaaattttgttgttcc 32533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 18015716 - 18015887
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||||||| |  ||||||||| ||    
T  18015716 actacagaaattagcctatgcgtagtaaagtaaacggagtaagccaccaaccatgatagttaaagggaagagttgtaaacttcacccccaaccacttaaa 18015815  T
Q  132 tgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
     ||||||||||||||||| ||||||||||||||||||| |||||  ||||| ||||||||| ||| ||||||    
T  18015816 cgttaacaacttaatcctatccaccacctgcataattgggctatcttttgccttaaaaattatgtcgttcct 18015887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 29321305 - 29321454
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||  |||||||||| ||| |||||||||    
T  29321305 ttagcctattcctagtaaagtaaatggactaagccaccaaccatcatagttaaagggaagagtgacaaacttcactttcaaccactggaaagttaacaac 29321404  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |||||||||||||||||||||||||| || |||  |||||||||||||||    
T  29321405 ttaatcctgtccaccacctgcataatagaactaacctttgcattaaaaat 29321454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 18672162 - 18671998
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||||| ||||||||||||||||||  || |||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||  |    
T  18672162 actacagagattagcctatgcctagtaaggtgaacggactcagccaccaaccatgatagttaaagggaagagtag-atacttcaccttcaaccacttata 18672064  T
Q  132 tgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgtt 197  Q
     |||| |||||||||| |||||||| |||| |||||||||||||  ||||||||||||||| ||||    
T  18672063 agttagcaacttaatcttgtccaccccctgaataattgagctatcttttgcattaaaaattatgtt 18671998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 11298573 - 11298723
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||  || |||||||||    
T  11298573 ttagcctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactgaaaagttaacaac 11298672  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
    |||||| ||||||| || |||||||| ||||||   |||||||||||||||    
T  11298673 ttaatcatgtccactacatgcataatagagctaacatttgcattaaaaatt 11298723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 15117238 - 15117351
Alignment:
Q  48 tatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaatc 147  Q
    |||||||| || ||| || ||||||  ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||  | |||| || |||||||    
T  15117238 tatgcctaataaagtgaaaggactactccaccaaccatgataattaaagggaagagtagcatacttcaccttcaaccacttataagttagcagcttaatc 15117337  T
Q  148 ctgtccaccacctg 161  Q
     |||||||||||||    
T  15117338 atgtccaccacctg 15117351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 5667344 - 5667479
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||||| || |||| ||||||   |||| || |||||||||| ||||| || |  |    
T  5667344 aattagcctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagttataaacctcgtcttcaaccatttgaaagtcagta 5667443  T
Q  140 acttaatcctgtccaccacctgcataattgagctat 175  Q
    |||||||||| || |||||||| |  ||||||||||    
T  5667444 acttaatcctatcgaccacctgtaagattgagctat 5667479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 11324584 - 11324501
Alignment:
Q  43 tagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||||||| |  || | |||||||||||||||||| |||||||| || |||||||||| |||||| |||  ||||||||||    
T  11324584 tagcctatgcccataatggcaaacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccac 11324501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 17292767 - 17292815
Alignment:
Q  62 taaacggactaagccaccaaccatgatagttaaagggaagagtagcaaa 110  Q
    |||||||||||||||| ||||||||||| || |||||||||| ||||||    
T  17292767 taaacggactaagccatcaaccatgataattgaagggaagagaagcaaa 17292815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 18673482 - 18673422
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    |||||| |||||||  ||||||||||| |||||||||||||||||||| || | |||||||    
T  18673482 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaaga 18673422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 32196798 - 32196881
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaacca 125  Q
    |||||| |||||||  || ||||||||||||||||| || ||||| || || |||||||||| |  ||||||| ||||||||||    
T  32196798 ttagccaatgcctaaaatggtaaacggactaagccatcacccatgttaattgaagggaagagaactaaacttcgtcttcaacca 32196881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 1767189 - 1767143
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatg 86  Q
    |||||||| |||||||| ||||||||||||||  |||||||||||||    
T  1767189 aattagccgatgcctaggatagtaaacggactttgccaccaaccatg 1767143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 12688283 - 12688221
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||||||||||||| |||||  | |||||||||||||||| ||| |||  ||||||||||    
T  12688283 aacggactaagccaccagccatgtaaattaaagggaagagtagtaaatttctccttcaaccac 12688221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 27105391 - 27105305
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||||| | |||  | |||||| |||||||||| |||||  | |||||||||| ||||| |||||||  ||||||||||    
T  27105391 aattagcctatgcccaatattttgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccac 27105305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 27147200 - 27147114
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||||| | |||  | |||||| |||||||||| |||||  | |||||||||| ||||| |||||||  ||||||||||    
T  27147200 aattagcctatgcccaatattttgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccac 27147114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 45718473 - 45718290
Alignment:
Q  19 atcaacccagaatactacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatct 118  Q
    ||||||||| || | |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  45718473 atcaacccataacattacagaaattagtctatgcctagtaaagtaaacgg-ctaagccaccaaccatgataattaaagggaagagtggcaaatttcatct 45718375  T
Q  119 tcaaccacttgaatgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    ||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  45718374 tcagccacttcaaagttaacaacttaatcttgtccaccacctgcataattgagctatcctttgcattaaaaattctgttgttcct 45718290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 5411859 - 5411698
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||||||||||  ||||||    
T  5411859 aattagcctattcttagtaaagtaaacggactaagccaacaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaatttaaca 5411760  T
Q  140 acttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttc 201  Q
    ||||||||||||||||||| |||||||| ||| ||| |||||||||||||||| | ||||||    
T  5411759 acttaatcctgtccaccacttgcataatagagttatcctttgcattaaaaattctattgttc 5411698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 12688306 - 12688135
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||| ||    
T  12688306 actacagaaattagcatatgcctagtaaagtaaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaa 12688207  T
Q  132 tgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
     |||| |||||||||| | |||||||||||||||||||  ||||  ||||| || |||||| |||| |||||    
T  12688206 agttagcaacttaatcttatccaccacctgcataattggactatcttttgccttgaaaattatgtttttcct 12688135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 48973769 - 48973619
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||||||||| |||||  |||||||||||||||||||| |||||||| ||||||||||||||  ||||||||| ||| ||||||||||| || ||||||    
T  48973769 ttagcctatgcgtagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaac 48973670  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
    |||||  ||||||||||||| ||||  || |||  ||||||||||||||||    
T  48973669 ttaattttgtccaccacctgtataacagaactaacctttgcattaaaaatt 48973619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 28442130 - 28442275
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    ||||| |||| || |||||| |||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||| ||| |||| ||||||||    
T  28442130 cctattcctaataaagtaaatggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccactggaaagttagcaacttaa 28442229  T
Q  146 tcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |  |||||||||| || ||||| ||||||  ||| |||||||||||    
T  28442230 tgttgtccaccacgtgtataatagagctaaccttggcattaaaaat 28442275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 28400614 - 28400494
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||| |||||||| |||| ||| || |||||||||||||| |||||||||||||| ||||||||  ||||||||| ||||| ||||| ||| ||||||||    
T  28400614 attatcctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcatccactggaaagttaacaa 28400515  T
Q  141 cttaatcctgtccaccacctg 161  Q
    ||||||||| |||||||||||    
T  28400514 cttaatcctatccaccacctg 28400494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 5958336 - 5958391
Alignment:
Q  71 taagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||    
T  5958336 taagccaccatccatgatagttaaagggaaaagtagcaaatttcaccttcaaccac 5958391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 44675193 - 44675122
Alignment:
Q  62 taaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatg 133  Q
    |||||||||||||||||||||||||||| || |||||||| | |||||| |||  |||||||||| ||||||    
T  44675193 taaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatg 44675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 26260850 - 26260785
Alignment:
Q  61 gtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||| |||||||||||||| |||||||| || |||||||||| ||||||||||  ||||||||||    
T  26260850 gtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccac 26260785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 50039773 - 50039686
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaa 122  Q
    |||||||| |||| |||||||||  || ||| |||||||||| |||||||||   ||| |||||||||||||||||| |||||| ||||||    
T  50039773 actacagagattatcctatgcctcataaagtgaacggactaatccaccaacc---ataattaaagggaagagtagcatacttcaccttcaa 50039686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 52251461 - 52251399
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    ||||| || |||||||| ||||  ||||||||||||||||||||||||||||| | |||||||    
T  52251461 aattaaccaatgcctagaatagagaacggactaagccaccaaccatgatagttgaggggaaga 52251399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 4889552 - 4889477
Alignment:
Q  58 atagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatg 133  Q
    ||||| || |||||||| ||||| |||||||||||||||||||||| ||  ||||||  ||| |||||| ||||||    
T  4889552 atagtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatg 4889477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 52626626 - 52626563
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    ||||||||||| |  | ||| ||||| ||||||||||||||||||||||| || ||||||||||    
T  52626626 aattagcctatacgcaatatggtaaatggactaagccaccaaccatgataattgaagggaagag 52626563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 2653702 - 2653748
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatg 86  Q
    |||||||| |||||||| |||| |||||| |||||||||||||||||    
T  2653702 aattagccaatgcctagaatagaaaacgggctaagccaccaaccatg 2653748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 34703485 - 34703547
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| ||| ||||||||||||||| |||||||||||||||| ||| | |||  ||||||||||    
T  34703485 aacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccac 34703547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 6723691 - 6723776
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||| || || || || ||||||||||||||||| |||||| | || || ||| |||||  |||||||| ||||||||||    
T  6723691 attagcctattccaagcatggtgaacggactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccac 6723776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 15259518 - 15259457
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    |||||||||||| ||||| ||||||||||||||| |||| ||||| || || | ||||||||    
T  15259518 ttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagag 15259457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 16909036 - 16909064
Alignment:
Q  61 gtaaacggactaagccaccaaccatgata 89  Q
    |||||||||||||||||||||||||||||    
T  16909036 gtaaacggactaagccaccaaccatgata 16909064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 10552758 - 10552595
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  10552758 aattagcctatgcctactaaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaatgttaaca 10552659  T
Q  140 acttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    |||||||||| ||||||||||||||||| ||||||| ||| | |||||||||| || |||||||    
T  10552658 acttaatcctatccaccacctgcataatagagctatccttagaattaaaaattatggtgttcct 10552595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 54870799 - 54870948
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  || ||||||||||| || |||||     
T  54870799 ttagcctatgcctagtaaagtaaacggactaagccaccaaccatgataattaaagggaagagttacaaacttcacatttaaccacttgaaagtcaacaat 54870898  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |||||| ||||||||||||| ||||  || |||  |||||||||||||||    
T  54870899 ttaatcttgtccaccacctgtataacagaactaacctttgcattaaaaat 54870948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 13137200 - 13137043
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| || |||  |||||||||||| |||| |||||||||| || | ||||||     
T  13137200 aattagcctatgcctagtaaggtaaacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttcaaccacctgtaagttaacg 13137101  T
Q  140 acttaatcctgtccaccacctgcataattgagctattc-tttgcattaaaaattttgtt 197  Q
    |||||||| ||||||||  |||||||||||||| |||| ||||| ||||||||| ||||    
T  13137100 acttaatcttgtccaccgtctgcataattgagc-attcttttgcgttaaaaattctgtt 13137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 42527317 - 42527473
Alignment:
Q  36 cagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgtt 135  Q
    ||||| ||||||||||| |||||  || |||||| ||||||||||||||||||| ||  | |||||||||| ||| |||| ||||||||||||| | |||    
T  42527317 cagaatttagcctatgcttagtaatgtgaacggattaagccaccaaccatgataattggaaggaagagtagaaaatttcaccttcaaccacttgtaggtt 42527416  T
Q  136 aacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
    |||||||||||| ||||| |||||| ||||||||||||||  | | |||||||||||    
T  42527417 aacaacttaatcatgtccgccacctacataattgagctatcttgtacattaaaaatt 42527473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 11131172 - 11131287
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    ||||| |||| || |||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||  || | || ||||||||    
T  11131172 cctattcctaataaagtaaaaggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaa 11131271  T
Q  146 tcctgtccaccacctg 161  Q
    |||| || ||||||||    
T  11131272 tcctatctaccacctg 11131287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 13157552 - 13157391
Alignment:
Q  39 aaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaac 138  Q
    ||||||||||||||||||||  |||||||||| ||||||| | ||||||||||| || |||||| ||   || |||  | |||||||| || | |||||     
T  13157552 aaattagcctatgcctagtacggtaaacggacaaagccactatccatgatagttgaaaggaagattaaagaatttctccctcaaccacctgtaagttaat 13157453  T
Q  139 aacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgtt 200  Q
     |||| ||  ||||||||||||||||||||||||| |  |||||||||||||| ||||||||    
T  13157452 gacttcattttgtccaccacctgcataattgagctttcttttgcattaaaaatcttgttgtt 13157391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 18922026 - 18921869
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||||| || ||| || ||||||  | ||||||||||||| |||||||||||||  ||| |||||| ||||||||||||  | |||| || |||||    
T  18922026 cctatgcctaataaagtgaaaggactagtcaaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagcttaa 18921927  T
Q  146 tcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    |||||||||||||||| | |||||| ||||  ||  ||||||||||  ||||||||||    
T  18921926 tcctgtccaccacctgaacaattgaactatgtttatcattaaaaatcatgttgttcct 18921869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 37207376 - 37207501
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||| |||| |||| |||| ||||||||| ||||| ||||||||||| ||||||||||||||   |||||||| ||| ||||| ||||| |||| ||||    
T  37207376 ttagcttatgtctagaatagaaaacggacttagccatcaaccatgataattaaagggaagagttataaacttcacctttaaccaattgaaagttagcaac 37207475  T
Q  142 ttaatcctgtccaccacctgcataat 167  Q
    |||||||| |||||||| || |||||    
T  37207476 ttaatcctatccaccacttgaataat 37207501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 40153906 - 40154021
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||| |||| |||| ||||| |||| | |||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||| || | |||| | ||    
T  40153906 ttagcgtatgtctagaatagtgaacgtattaagccaccaactatgatagttaaagggaagattagcaaatttcaccttcaaccacctgtaagttaccgac 40154005  T
Q  142 ttaatcctgtccacca 157  Q
    |||||| |||||||||    
T  40154006 ttaatcttgtccacca 40154021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 30739504 - 30739619
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||||| || ||| || ||||||  ||||||||||||||| |||||||||||||  ||| |||||| ||||||||||||  | |||| || |||||    
T  30739504 cctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagcttaa 30739603  T
Q  146 tcctgtccaccacctg 161  Q
    || |||||||||||||    
T  30739604 tcatgtccaccacctg 30739619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 52578101 - 52578018
Alignment:
Q  43 tagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||||| || | ||||| ||||||||||||||||||||| || ||||||||||   ||||||||| ||||||||||    
T  52578101 tagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccac 52578018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 25130442 - 25130511
Alignment:
Q  62 taaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||| |||  |||||||||| ||||    
T  25130442 taaacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaa 25130511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 30972368 - 30972499
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    ||||||||||||| |  ||||| ||  ||||||||||||| ||||||||||| |||||||||| || ||| |||  ||||| |||| |||| || | | |    
T  30972368 attagcctatgccaaaaatagtgaaatgactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcga 30972467  T
Q  141 cttaatcctgtccaccacctgcataattgagc 172  Q
    ||||||  | || |||||||||||||||||||    
T  30972468 cttaattttatcaaccacctgcataattgagc 30972499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 13608927 - 13608989
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||||| || || |||||||||    
T  13608927 aattaacctatgtcaagtatggtaaacggactaagccaccaaccatggtaattgaagggaaga 13608989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 48337079 - 48336974
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    ||||||||||||||| |||||| || | ||||| |||||||| |||||  || |||||||||| || ||| |||  |||||||||| |||| |||| | |    
T  48337079 attagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcga 48336980  T
Q  141 cttaat 146  Q
    ||||||    
T  48336979 cttaat 48336974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 8814120 - 8814052
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagca 108  Q
    ||||| || |||||||| |||| |||||||||||||||||||||||| || || | ||||||| |||||    
T  8814120 aattaaccaatgcctagaatagaaaacggactaagccaccaaccatggtaattgaggggaagactagca 8814052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 12115114 - 12114995
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||||||||| || || || ||||||||||| |||||| |||||||||| || ||||||||| || | |  |||| |||||||||| | || ||||   |    
T  12115114 attagcctataccgaggatggtaaacggactgagccacaaaccatgataattgaagggaagaataacgagtttcaccttcaaccacctaaaggttactga 12115015  T
Q  141 cttaatcctgtccaccacct 160  Q
    ||| ||| ||||||||||||    
T  12115014 cttgatcttgtccaccacct 12114995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 19846627 - 19846573
Alignment:
Q  61 gtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttca 115  Q
    ||||||||||||| |||||| |||||||| || |||||||||| |||| ||||||    
T  19846627 gtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttca 19846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 26169221 - 26169267
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatg 86  Q
    ||||||||||||||||  |||||||||||||| ||||| ||||||||    
T  26169221 aattagcctatgcctacgatagtaaacggacttagccagcaaccatg 26169267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 29969940 - 29969878
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||||||||||||| | |||  ||||||||||||| ||| |||  ||||||||||    
T  29969940 aacggactaagccaccaaccataaaagtagaagggaagagtagtaaatttcgccttcaaccac 29969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 45637550 - 45637504
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatg 86  Q
    |||||||| |||||||| |||| |||||| |||||||||||||||||    
T  45637550 aattagccaatgcctagaatagaaaacgggctaagccaccaaccatg 45637504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 20510512 - 20510427
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| |||||||| || || || |||||||||||||||||||||||| | || |||||||| ||   ||| |||| ||||||||||    
T  20510512 attaacctatgcccagcatggtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccac 20510427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 9831486 - 9831418
Alignment:
Q  58 atagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||| ||||||||||||||||| |||||||| || |||||||| ||| | || |||  ||||||||||    
T  9831486 atagtgaacggactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccac 9831418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 27270012 - 27270076
Alignment:
Q  67 ggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    ||||||||||||||||||||||| || |||||||| | || ||| |||  |||||||||| ||||    
T  27270012 ggactaagccaccaaccatgataattgaagggaagtgaaggaaatttcgccttcaaccacatgaa 27270076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 841522 - 841690
Alignment:
Q  35 acagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgt 134  Q
    |||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |    
T  841522 acagcaattagcctatgcctagtaaagtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaatat 841621  T
Q  135 taacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||   |||||||| ||||||||||||    
T  841622 taacaacttaatcctatccaccacctgcataatagagctatccttataattaaaaaatttgttgttcct 841690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 24739936 - 24739785
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  24739936 attaccctatgcctagaatagtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgttaacaa 24739837  T
Q  141 cttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
    ||||||||| ||||||||||||||||| ||||||  ||| | ||||||||||    
T  24739836 cttaatcctatccaccacctgcataatagagctaaccttagaattaaaaatt 24739785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 40426897 - 40427068
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||| || |||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||  |||||| ||||  |    
T  40426897 actacataatttagccgatgcctagtaaagtgaacggattaagccaccaaccatgatagttaaagggaagagtaacatacttcactttcaactacttaca 40426996  T
Q  132 tgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
     |||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| |||| |||||    
T  40426997 agttagcaacttaatcctgtccaccacctgcataattgagctatcttttgcgttaaaaattatgttattcct 40427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 38409112 - 38408950
Alignment:
Q  35 acagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgt 134  Q
    |||| ||||||||||| ||||| || ||||||||||| | ||||||||||||||| || |||||||| ||||| || |||| ||||||| || || | ||    
T  38409112 acagtaattagcctatacctagaatggtaaacggactgaaccaccaaccatgataattgaagggaagtgtagcgaatttcaccttcaactacatgtaagt 38409013  T
Q  135 taacaacttaatcctgtccaccacctgcataattgagctattcttt-gcattaaaaattttgtt 197  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||||| |||||||||||| ||||    
T  38409012 taacgacttaatcttgtccaccacttgcataattgagc-attcttttgcattaaaaattatgtt 38408950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 1997682 - 1997811
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||||| || ||| || ||||||  ||||||||||||||| |||||||||||||  ||| |||||| ||||||||||||  | |||| || |||||    
T  1997682 cctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagcttaa 1997781  T
Q  146 tcctgtccaccacctgcataattgagctat 175  Q
    || ||||||||||||| | |||||| ||||    
T  1997782 tcatgtccaccacctgaacaattgaactat 1997811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 27009317 - 27009255
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||| || || ||||||||||    
T  27009317 attagcctatgtccagtatggtaaacggactaagccaccaaccatggtaattgaagggaagag 27009255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 37738065 - 37738130
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtag 106  Q
    ||||||||||||| |  || || ||||||||||||||||| |||||| ||||||||||||||||||    
T  37738065 attagcctatgcccaaaatggtgaacggactaagccaccagccatgaaagttaaagggaagagtag 37738130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 31640356 - 31640273
Alignment:
Q  43 tagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||||  || |||||||||||||||||||| ||||| || || | |||||||| |||||| |||  ||||||||||    
T  31640356 tagcctatgcctataattgtaaacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccac 31640273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 45131105 - 45131196
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||||| ||||| || || ||||| |||||||||||||| |||||||| || |||||||||| |||| | |||  |||||||||| ||||    
T  45131105 aattagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaa 45131196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 8090586 - 8090525
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    |||||| |||||||  || |||||||||||||||||||| |||||||| || ||||||||||    
T  8090586 ttagccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaagag 8090525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 9420733 - 9420794
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    ||||||||||||||  ||||||||||| ||||||||||| |||||||| || | ||||||||    
T  9420733 ttagcctatgcctaaaatagtaaacgggctaagccaccacccatgataattgaggggaagag 9420794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 35590342 - 35590202
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    ||||||||||||| |  ||||  || || ||||||||||||||||||||||| |||||||||   | | |||||  ||||| |||| |||| || | |||    
T  35590342 attagcctatgcccaaaatagagaaggggctaagccaccaaccatgatagttgaagggaagacacggatacttcgccttcagccacctgaaagtcagcaa 35590243  T
Q  141 cttaatcctgtccaccacctgcataattgagctattctttgc 182  Q
    ||||||  | || |||||||| |||||||||| |||||||||    
T  35590242 cttaattttatcaaccacctgaataattgagc-attctttgc 35590202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 40638803 - 40638868
Alignment:
Q  61 gtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||||||||||| ||||| || || |||||||||| |||| |||||| | ||||||||    
T  40638803 gtaaacggactaagccaccacccatggtaattgaagggaagagaagcatacttcaacatcaaccac 40638868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 12606972 - 12606929
Alignment:
Q  49 atgcctagtatagtaaacggactaagccaccaaccatgatagtt 92  Q
    ||||||||||| | |||||| |||||||||||||||||||||||    
T  12606972 atgcctagtatcgcaaacgggctaagccaccaaccatgatagtt 12606929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 9840862 - 9840816
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaa 110  Q
    |||||| ||||||||||||||||||| || || ||||||||||||||    
T  9840862 aacggattaagccaccaaccatgataattgaatggaagagtagcaaa 9840816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 18766790 - 18766728
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    ||||||| |||||| ||||| || |||||| |||||||||| |||||| | ||||||||||||    
T  18766790 aattagcatatgcccagtattgtgaacggattaagccaccagccatgaaaattaaagggaaga 18766728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 18948891 - 18948766
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaatcctgtccaccacctgca 163  Q
    |||||| ||||||||||||| ||||| || |||| |||||  | | | |||| | |||||||| || | |||| | |||||||  ||||||| |||||||    
T  18948891 aacggattaagccaccaaccgtgataattgaaggcaagagatgaacatttcaccctcaaccacctgtaagttaccgacttaattttgtccacaacctgca 18948792  T
Q  164 taattgagctattcttt-gcattaaaa 189  Q
    ||||||||| ||||||| |||||||||    
T  18948791 taattgagc-attctttcgcattaaaa 18948766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 27708166 - 27708235
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaa 110  Q
    ||||||||||||| ||||  || ||| || |||||||||||||||||   || |||||||||||||||||    
T  27708166 attagcctatgcccagtacggtgaacagattaagccaccaaccatgaagattgaagggaagagtagcaaa 27708235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 44735955 - 44736040
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||| ||||| | || |||| |||| ||||||||||| |||||||| | || ||||||||||||  |||||||  ||||||||||    
T  44735955 attagtctatgtccagcatagcaaacagactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccac 44736040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 30505834 - 30505774
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaag 101  Q
    ||||||||||||| |  || |||||| |||||| ||||||||||||||| || ||||||||    
T  30505834 attagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaag 30505774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 40616713 - 40616865
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  40616713 aattagcctatgcctagtaaagtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccacttgaattttaaca 40616812  T
Q  140 acttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
    |||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||    
T  40616813 acttaatcctatccaccacctgcataatagagctatccttagaattaaaaatt 40616865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 27855001 - 27854850
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||| ||||||||||| ||||| || |  |||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  27855001 attaccctatgcctagaatagtgaatgagctaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgttaacaa 27854902  T
Q  141 cttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
    ||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||    
T  27854901 cttaatcctatccaccacctgcataatagagctatccttagaattaaaaatt 27854850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 38343084 - 38342921
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||||| ||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||| |||||||    
T  38343084 aattagcatattcctagtaaagtaaacggattaagtcaccaaccatgatagttaaagggaagagttacaagcttcaccttcaaccacttgaaagttaaca 38342985  T
Q  140 acttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||||| | ||||||||    
T  38342984 acttaatcctgtccaccacttgcataatagagccaacctttgcattaaaaattatattgttcct 38342921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 11884487 - 11884323
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||| |||||||| ||||||||||| |||||| |||||||||||       |||||||| |||  |||||| | |||||||| |||||||||||| ||    
T  11884487 actacaaaaattagcatatgcctagtaaagtaaatggactaagcca-------tgatagttgaagataagagttggaaacttcaccttcaaccacttaaa 11884395  T
Q  132 tgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
     ||||||||||||||||||||||||||||| ||||||| |||||  ||||| ||||||||||||||||||||    
T  11884394 agttaacaacttaatcctgtccaccacctgtataattgggctatcttttgccttaaaaattttgttgttcct 11884323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 8566753 - 8566872
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||||||||||||| |||| ||||||||| |||| |||||||| ||||||||| |||||| | | |||||||| ||| ||||| | ||| |||| ||||    
T  8566753 ttagcctatgcctagaatagaaaacggacttagccgccaaccattatagttaaaaggaagattggaaaacttcacctttaaccaatggaaagttagcaac 8566852  T
Q  142 ttaatcctgtccaccacctg 161  Q
    |||||||| |||||||||||    
T  8566853 ttaatcctatccaccacctg 8566872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 34871680 - 34871565
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||| |||| ||| || |||||||||||||| | ||||||||||||  |||||  | ||||||||| ||||||||||| ||| |||||||||||||    
T  34871680 cctatgccaagtaaagtgaatggactaagccaccacctatgatagttaaaaagaagatgaacaaacttcaccttcaaccactggaaagttaacaacttaa 34871581  T
Q  146 tcctgtccaccacctg 161  Q
    |||| |||||||||||    
T  34871580 tcctatccaccacctg 34871565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 47543544 - 47543460
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||| |||||||  || ||||||||||||||||| || |||||||| || |||||||||| |  ||||||| |||||||||||    
T  47543544 ttagccaatgcctaaaatggtaaacggactaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccac 47543460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 9628319 - 9628257
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||||| || || |||||||||    
T  9628319 aattaacctatgtcaagtatggtaaacggactaagccaccaaccatggtaattgaagggaaga 9628257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 35516812 - 35516750
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||| | | || |||||||||    
T  35516812 aattagccaatgcctaggatagtaaatggactaagccaccaaccataaaaatttaagggaaga 35516750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 38153997 - 38153939
Alignment:
Q  68 gactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||||||||| | ||| ||||||||||||||||||| ||| |||| ||||||||||    
T  38153997 gactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccac 38153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 37137359 - 37137292
Alignment:
Q  136 aacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    |||||||||||| |||||||||| ||||  |||||||| | ||| |||||||||||| |||| |||||    
T  37137359 aacaacttaatcttgtccaccacttgcaatattgagctttccttggcattaaaaattatgttattcct 37137292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 42017906 - 42017855
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagtt 92  Q
    ||||||||||||| |  ||||| ||||||||||||||||| |||||||||||    
T  42017906 attagcctatgcccaacatagtgaacggactaagccaccatccatgatagtt 42017855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 12092778 - 12092733
Alignment:
Q  58 atagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    |||||||| |||||||||||| | ||||||||||| ||||||||||    
T  12092778 atagtaaatggactaagccactatccatgatagtttaagggaagag 12092733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 17116403 - 17116468
Alignment:
Q  61 gtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||| ||||||||||||||||||||||  | |||||||||| |||| | |||  ||||||||||    
T  17116403 gtaaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccac 17116468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 41529509 - 41529424
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| |||||||| || || || ||||||||||| |||||||||||| | || |||||||| ||   ||| |||||||||||||||    
T  41529509 attaacctatgcccagcatggtgaacggactaagtcaccaaccatgaaaattgaagggaagcgtgttaaatttcatcttcaaccac 41529424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 200
Target Start/End: Original strand, 7961123 - 7961283
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||  ||||||||||| |||||  |||||||||||||||||||| ||    
T  7961123 aattatcctatgcctagtaaagtgaacgaactaagccaccaaccatgatagttaaaatgaagagtagcatacttcgccttcaaccacttgaatgttagca 7961222  T
Q  140 acttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgtt 200  Q
    |||||||||| ||||||||||||||||| | |||||  || |||||||||||| |||||||    
T  7961223 acttaatcctatccaccacctgcataatggcgctatcattagcattaaaaattatgttgtt 7961283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 21042067 - 21041918
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    |||||| ||||||||||  |||||||||||||||||||| |||||||| ||||||||||||||  ||||||||| ||  ||||||||||| || ||||||    
T  21042067 ttagccgatgcctagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctataaccacttgaaagtcaacaac 21041968  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |||||  ||||||||||||| ||||  || |||  |||||||||||||||    
T  21041967 ttaattttgtccaccacctgtataacagaactaacctttgcattaaaaat 21041918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 32017964 - 32018113
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||| ||||||||||| ||||  || | ||||||||||||||||||||| |||||||||||  ||||| ||| || ||||||||||||||| ||||||||    
T  32017964 attaccctatgcctagaatagagaatgaactaagccaccaaccatgataattaaagggaaggttagcatactgcaccttcaaccacttgaaagttaacaa 32018063  T
Q  141 cttaatcctgtccaccacctgcataattgagctattctttgcattaaaaa 190  Q
    ||||||||| ||||||||||  ||||| | ||||| ||| | ||||||||    
T  32018064 cttaatcctatccaccacctctataatagggctatccttcgaattaaaaa 32018113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 7465337 - 7465180
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||||| || ||| || ||||||  ||||||||||||||| |||||||||||||  ||| |||||| ||||||||||||  | |||| || |||||    
T  7465337 cctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagcttaa 7465238  T
Q  146 tcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    || ||||||||||||  | |||||| || |  ||  ||||||||||||||||||||||    
T  7465237 tcttgtccaccacctaaacaattgaactgtgtttatcattaaaaattttgttgttcct 7465180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 29994743 - 29994640
Alignment:
Q  35 acagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgt 134  Q
    ||||||| ||||| |||||||  | |||||||||| ||||||||||||||||||| || |||||||||  || |||||||| |||||||||||| || ||    
T  29994743 acagaaaatagccaatgcctaaaacagtaaacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaagt 29994644  T
Q  135 taac 138  Q
    ||||    
T  29994643 taac 29994640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 16610687 - 16610602
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||| |||||||  || |||||||||||||||||||| |||||||| || |||||||||| | |||||||| |||||||||||    
T  16610687 attagccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 39839997 - 39839933
Alignment:
Q  67 ggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||| ||||||||||| ||||    
T  39839997 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccacatgaa 39839933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 32252238 - 32252172
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagc 107  Q
    |||||||||| || || || ||||||||||||||||||||||||||||| || || |||||||||||    
T  32252238 attagcctataccgagaatggtaaacggactaagccaccaaccatgataattgaaaggaagagtagc 32252172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 19314983 - 19315031
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgata 89  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||    
T  19314983 attagcctatgcctagcatggtaaacgggctaagccaccaaccatgata 19315031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 26778699 - 26778791
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatg 133  Q
    ||||||||||| | || || ||||||||||||| ||||||||||||||| || |||| ||||| |  ||| |||| |||||||||| ||||||    
T  26778699 attagcctatgtcgagcatggtaaacggactaaaccaccaaccatgataattgaaggaaagagaaaaaaatttcaccttcaaccacatgaatg 26778791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 704496 - 704567
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaactt 113  Q
    |||||| ||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||  |||||||||    
T  704496 ttagccaatgcccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactt 704567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 804398 - 804500
Alignment:
Q  61 gtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaatcctgtccaccacct 160  Q
    ||||||||||| |||||||| ||||| |||||| |||| |||||| || | |||  |||||||||| |||| |||||  |||| ||| |||| ||||| |    
T  804398 gtaaacggacttagccaccagccatggtagttagaggggagagtaacacatttctccttcaaccacatgaaagttaaggactttatcttgtctaccactt 804497  T
Q  161 gca 163  Q
    |||    
T  804498 gca 804500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 8006894 - 8006832
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    |||||| | ||| |||| |||||||| ||||| ||||||||||||||||| || |||||||||    
T  8006894 aattagtcaatgtctaggatagtaaatggactgagccaccaaccatgataattgaagggaaga 8006832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 12831493 - 12831578
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| |||||||| |  ||||| |||||||||||||||||||||||| | || |||||||| ||   ||| |||| ||||||||||    
T  12831493 attaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccac 12831578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 12863468 - 12863553
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| |||||||| |  ||||| |||||||||||||||||||||||| | || |||||||| ||   ||| |||| ||||||||||    
T  12863468 attaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccac 12863553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 31706406 - 31706467
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagag 103  Q
    |||||||||||| | ||| |||||||||||||||||||| ||||| || || | ||||||||    
T  31706406 ttagcctatgcccaatatggtaaacggactaagccaccacccatggtaattgaggggaagag 31706467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 12564929 - 12564993
Alignment:
Q  97 ggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaatcctgtccaccacctg 161  Q
    |||| ||||||| |||||| ||||||||||||  | |||| || ||||| |||||||||||||||    
T  12564929 ggaatagtagcatacttcaccttcaaccacttataagttagcagcttaaacctgtccaccacctg 12564993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 27482652 - 27482736
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||||||||||| |  || || ||||||||||||||||| |||||||| || |||||||| ||| |  | |||| ||||||||||    
T  27482652 ttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccac 27482736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 19979258 - 19979408
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    ||||||||||  |||||| |||||| || |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||     
T  19979258 attagcctatttctagtaaagtaaatgggctaagccaccaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaagttaacag 19979357  T
Q  141 cttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    ||||||| ||||||||||||||| ||| || |||  |||||||||||||||    
T  19979358 cttaatcatgtccaccacctgcagaatagaactagcctttgcattaaaaat 19979408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 29542378 - 29542517
Alignment:
Q  52 cctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaatcctgt 151  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||| ||| |||||| |||    
T  29542378 cctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagttagcaagttaatcatgt 29542477  T
Q  152 ccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |||||||||| ||||| ||||||  ||| |||||||||||    
T  29542478 ccaccacctgtataatagagctaaccttggcattaaaaat 29542517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 41878806 - 41878661
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||| ||||||||    
T  41878806 cctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagttagcaacttaa 41878707  T
Q  146 tcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    ||||||||||||| || |||||  ||| |  ||| |||||||||||    
T  41878706 tcctgtccaccacttgtataatatagccaaccttggcattaaaaat 41878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 53876862 - 53877011
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||  ||||||||| ||| ||||||||||| || ||||||    
T  53876862 ttagcctatgcctagtaaagtaaacggaccaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaac 53876961  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |||||  ||||||||||||| ||||  || |||  ||||||| |||||||    
T  53876962 ttaattttgtccaccacctgtataacagaactaacctttgcaataaaaat 53877011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 47161113 - 47160945
Alignment:
Q  35 acagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgt 134  Q
    ||||||||||||| |||||||  | | ||||||| ||||||||||||||||| || || || ||||||| || |||||||| |||||||||||| || ||    
T  47161113 acagaaattagccaatgcctaaaacaataaacggtctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagt 47161014  T
Q  135 taacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    ||||||||||||||| |||||||| |||| ||||||||| | ||| | |||||||||| |||| |||||    
T  47161013 taacaacttaatcctatccaccacttgcaaaattgagctttccttgggattaaaaattctgttattcct 47160945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 6926069 - 6925920
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    |||||| ||||||||||  |||||||||||||||||||| |||||||| ||||||||||||||  ||||||||| ||| ||||||||| | || ||||||    
T  6926069 ttagccgatgcctagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgtaagtcaacaac 6925970  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    |||||  ||||||||||||| ||||  || |||  ||||| |||||||||    
T  6925969 ttaattttgtccaccacctgtataacagaactaacctttgtattaaaaat 6925920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 22534122 - 22533989
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||| ||||| || |||| |||||| |||||||||||||| |||||||||||||| ||||||||  ||||||||| ||||||||||| ||| ||||||||    
T  22534122 attaacctattccaagtaaagtaaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccactggaaagttaacaa 22534023  T
Q  141 -cttaatcctgtccaccacctgcataattgagct 173  Q
     ||||||||| ||||||||||| ||||| |||||    
T  22534022 ccttaatcctatccaccacctgtataatagagct 22533989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 42806269 - 42806389
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||| |||||||| |||| ||| || |||||||||||||| |||||||||||||| ||||||||  ||||||||| ||||||||||  ||| ||||||||    
T  42806269 attatcctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccacaggaaagttaacaa 42806368  T
Q  141 cttaatcctgtccaccacctg 161  Q
    ||||||||| |||||||||||    
T  42806369 cttaatcctatccaccacctg 42806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 37537207 - 37537328
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||||||||| || ||||| | ||||||  |||||||||||||||||||  |||||||||||| ||| ||||||| |||||||||| | || ||||  |    
T  37537207 aattagcctataccgagtatggaaaacgggttaagccaccaaccatgataagtaaagggaagagaagcgaacttcaccttcaaccacctaaaggttacaa 37537306  T
Q  140 acttaatcctgtccaccacctg 161  Q
     ||||||| |||||||||||||    
T  37537307 ccttaatcttgtccaccacctg 37537328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 23050235 - 23050103
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||  |||| ||||||||| ||||    |||  |||||||||| |||| ||  |      
T  23050235 aattagccaatgcctaggatagtaaatggactaagccaccaaccatgggagtttaagggaagactagcgtgtttccccttcaaccacgtgaaagtcgatg 23050136  T
Q  140 acttaatcctgtccaccacctgcataattgagc 172  Q
    |||||||| ||||||| ||||||||||||||||    
T  23050135 acttaatcttgtccactacctgcataattgagc 23050103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 6894313 - 6894178
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    ||||| ||||||||||  |||||||||||||||| ||||||||||||||| || |||||||||||   |||| ||  ||||||||| ||||| || |  |    
T  6894313 aattaacctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaaccatttgaaagtcagta 6894214  T
Q  140 acttaatcctgtccaccacctgcataattgagctat 175  Q
    |||||||||| || |||||||| |  ||||||||||    
T  6894213 acttaatcctatcgaccacctgtaagattgagctat 6894178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 26285302 - 26285145
Alignment:
Q  40 aattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaaca 139  Q
    |||||||||||||||||||  || |||||| ||||||| ||||| ||||| || ||| |||| |||||||| ||||  |||||||||  | | ||||||     
T  26285302 aattagcctatgcctagtaaggtgaacggattaagccatcaaccttgataattgaagtgaagggtagcaaatttcacattcaaccaccagtaagttaacg 26285203  T
Q  140 acttaatcctgtccaccacctgcataattgagctattc-tttgcattaaaaattttgtt 197  Q
    |||||||| | | ||| ||||||||||||| || |||| ||||| ||||||||||||||    
T  26285202 acttaatcttattcactacctgcataattgtgc-attcttttgccttaaaaattttgtt 26285145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 45966950 - 45967072
Alignment:
Q  39 aaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaac 138  Q
    |||||||||||| || || || ||||||||| | |||||||||||||||||||| || ||||||| ||| | | ||| |||||||||| | || |||| |    
T  45966950 aaattagcctataccaagaatggtaaacggatttagccaccaaccatgatagttgaaaggaagagaagcgatcctcaccttcaaccacctaaaggttacc 45967049  T
Q  139 aacttaatcctgtccaccacctg 161  Q
      ||||||| |||||||||||||    
T  45967050 gccttaatcttgtccaccacctg 45967072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 42674075 - 42674128
Alignment:
Q  39 aaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagtt 92  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||||||    
T  42674075 aaattagccaatgcctagaacagtaaagggactaagccaccaaccatgatagtt 42674128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 4741117 - 4741033
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||||||||||  || ||||||||||||||||| || ||||| || || |||||||||| |  | ||||| |||||||||||    
T  4741117 ttagcctatgcctaaaatggtaaacggactaagccatcacccatggtaattgaagggaagagaaatatacttcgtcttcaaccac 4741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 25845741 - 25845677
Alignment:
Q  67 ggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||||||||||||||||| ||||| ||||| |||| || |||||||  |||||||||| ||||    
T  25845741 ggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaa 25845677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 21408117 - 21408176
Alignment:
Q  49 atgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagca 108  Q
    |||||||| |||| |||||||||||||||||||||||| || || | ||||||| |||||    
T  21408117 atgcctagaatagaaaacggactaagccaccaaccatggtaattgaggggaagactagca 21408176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 33692880 - 33692965
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| |||||||| || || || ||||| |||||||||||||||||| |||| |||||||| ||   ||| |||| ||||||||||    
T  33692880 attaacctatgcccagcatggtgaacgggctaagccaccaaccatgaaagttgaagggaagcgtgttaaatttcaccttcaaccac 33692965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 41255018 - 41255179
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaac 141  Q
    |||||||||| ||| || ||  |||||||||||||||||||||||||||||||||||||||  |||| | || | ||||||||||||||||||||  |||    
T  41255018 ttagcctatgtctaataaagggaacggactaagccaccaaccatgatagttaaagggaagataagcatagttaaccttcaaccacttgaatgttagtaac 41255117  T
Q  142 ttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgttgttcct 203  Q
    |||||||  ||||||||||||||||| || |||||||| |||||||||||| ||||||||||    
T  41255118 ttaatccgatccaccacctgcataatggaactattcttagcattaaaaattatgttgttcct 41255179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 7179010 - 7179160
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    |||||||||| ||||||| |||||  ||||||||||||||| ||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||    
T  7179010 attagcctattcctagtaaagtaattggactaagccaccaatcatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaagttaacaa 7179109  T
Q  141 cttaatcctgtccaccacctgcataattgagctattctttgcattaaaaat 191  Q
    ||||||  |||||||||| |||| ||| || |||  |||||||||||||||    
T  7179110 cttaattatgtccaccacttgcagaatagaactaacctttgcattaaaaat 7179160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 33191181 - 33191337
Alignment:
Q  39 aaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaac 138  Q
    ||||||||| ||| |||||  ||| |||||||||||||||||||||||||| || |||||||||||| |||| |||| |||||||||| || ||||||||    
T  33191181 aaattagcccatgtctagttaagtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgtgtatgttaac 33191280  T
Q  139 aacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaattttgt 196  Q
    |||||||| ||||||||||| |||||||| |||| ||  |||||||| |||| |||||    
T  33191281 aacttaat-ctgtccaccacgtgcataatagagcaatcttttgcattgaaaaatttgt 33191337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 38685888 - 38685728
Alignment:
Q  32 actacagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    |||||||| |||| |||| ||||| || ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||||  |    
T  38685888 actacagagattatcctacgcctaataaagtgaacggactaatccaccaaccatgatagttaaagggaagagtagcatacttcaccttcgaccacttata 38685789  T
Q  132 tgttaacaacttaatcctgtccaccacctgcataattgagctattctttgcattaaaaatt 192  Q
     |||| |||||||||| ||||||||||||| |  ||||| ||||  |||||| ||||||||    
T  38685788 agttagcaacttaatcatgtccaccacctgaacgattgaactatgttttgcaataaaaatt 38685728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 10617029 - 10616933
Alignment:
Q  35 acagaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 131  Q
    ||||||||||||||||||||| || ||  |||| |||||||||||||||||||||||| || |||| |||||||||||||| || ||||||||||||    
T  10617029 acagaaattagcctatgcctaataaagcgaacgaactaagccaccaaccatgatagttgaaaggaatagtagcaaacttcacctccaaccacttgaa 10616933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 16489445 - 16489560
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||| |||| ||| || |||||||||||||| | ||||||||||||  |||||  | ||||||||| ||||||||||| ||| |||||||||||||    
T  16489445 cctatgccaagtaaagtgaatggactaagccaccacctatgatagttaaaaagaagatgaacaaacttcaccttcaaccactggaaagttaacaacttaa 16489544  T
Q  146 tcctgtccaccacctg 161  Q
    |||| |||||||||||    
T  16489545 tcctatccaccacctg 16489560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 37929203 - 37929141
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  37929203 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 37929141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 38233316 - 38233202
Alignment:
Q  46 cctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaa 145  Q
    |||||||||| || ||| || ||||||  ||||||||||||||| |||||||||||||  ||| |||||| ||||||||||||  | |||| || |||||    
T  38233316 cctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagcttaa 38233217  T
Q  146 tcctgtccaccacct 160  Q
    || ||||||||||||    
T  38233216 tcttgtccaccacct 38233202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 8462513 - 8462615
Alignment:
Q  61 gtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaacttaatcctgtccaccacct 160  Q
    |||||| |||||||||||||||||||||| || |||||||||| |||||| |||  |||||||||| ||||||| |   |||||||| | || |||||||    
T  8462513 gtaaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacct 8462612  T
Q  161 gca 163  Q
    |||    
T  8462613 gca 8462615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 5048605 - 5048520
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    |||| |||||||| ||||| || |||||||||||||||||||||||| |||| |||||||| |||   || |||| ||||||||||    
T  5048605 attaacctatgcccagtatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtatttaatttcaccttcaaccac 5048520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 39896256 - 39896308
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaa 94  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||    
T  39896256 ttagcctatgcctagtaaagtaaacggactaagccaccacccataatatttaa 39896308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 31686431 - 31686493
Alignment:
Q  64 aacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 126  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||| ||| |||  ||||||||||    
T  31686431 aacggactaagccgccacccatggtagttaaagggaagagtaggaaatttctccttcaaccac 31686493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 38738543 - 38738483
Alignment:
Q  42 ttagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaaga 102  Q
    |||||| |||||||  ||||||||||| |||||||||||||||||||| || | |||||||    
T  38738543 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaaga 38738483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 32988491 - 32988534
Alignment:
Q  35 acagaaattagcctatgcctagtatagtaaacggactaagccac 78  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||    
T  32988491 acagcaattagcctatgcctagtaaagtgaacggactaagccac 32988534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 33282920 - 33282886
Alignment:
Q  55 agtatagtaaacggactaagccaccaaccatgata 89  Q
    ||||| |||||||||||||||||||||||||||||    
T  33282920 agtatggtaaacggactaagccaccaaccatgata 33282886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 21523951 - 21523887
Alignment:
Q  69 actaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatg 133  Q
    |||||| ||||||||||||||||| ||||||||||  | |||||||   ||||||||| ||||||    
T  21523951 actaagtcaccaaccatgatagttgaagggaagagatggaaacttcgctttcaaccacatgaatg 21523887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 6627 - 6498
Alignment:
Q  38 gaaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaa 137  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||| ||||     
T  6627 gaaattagcctatgcctagaatagcaaacggacttagccaccaaccatgatagttaaagggaagagttgtaaacttcacctttaaccaattgaaagttag 6528  T
Q  138 caacttaatcctgtccaccacctgcataat 167  Q
    |||||||||||| || |||||||| |||||    
T  6527 caacttaatcctatctaccacctgaataat 6498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 2279 - 2158
Alignment:
Q  39 aaattagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaac 138  Q
    |||||||||||| || || || ||||| ||||| ||||||||||||||||| || ||||| |||| ||| | ||||| |||||||||| | || |||| |    
T  2279 aaattagcctataccgaggatggtaaatggactgagccaccaaccatgataattgaaggggagagaagcgagcttcaccttcaaccacctaaaggttacc 2180  T
Q  139 aacttaatcctgtccaccacct 160  Q
     |||| ||| ||||||||||||    
T  2179 gacttgatcttgtccaccacct 2158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 24601 - 24496
Alignment:
Q  41 attagcctatgcctagtatagtaaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaa 140  Q
    ||||||||||||||| |||||| || | ||||| |||||||| |||||  || |||||||||| || ||| |||  |||||||||| |||| |||| | |    
T  24601 attagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcga 24502  T
Q  141 cttaat 146  Q
    ||||||    
T  24501 cttaat 24496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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