View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4124_low_4 (Length: 613)

Name: NF4124_low_4
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4124_low_4
NF4124_low_4
[»] chr2 (12 HSPs)
chr2 (11-598)||(19590094-19590679)
chr2 (40-336)||(5380797-5381091)
chr2 (40-188)||(36314122-36314270)
chr2 (40-338)||(25280457-25280751)
chr2 (40-188)||(1592639-1592787)
chr2 (92-336)||(12563394-12563633)
chr2 (60-186)||(41055488-41055613)
chr2 (109-183)||(21278998-21279072)
chr2 (206-336)||(10585949-10586080)
chr2 (60-183)||(21612979-21613102)
chr2 (205-336)||(1592494-1592626)
chr2 (205-336)||(36313976-36314108)
[»] chr4 (9 HSPs)
chr4 (40-336)||(31939878-31940170)
chr4 (40-338)||(19032446-19032739)
chr4 (40-336)||(13770118-13770412)
chr4 (40-186)||(24783133-24783277)
chr4 (35-336)||(32823184-32823483)
chr4 (230-336)||(24783005-24783107)
chr4 (60-183)||(30226273-30226396)
chr4 (250-338)||(8673673-8673760)
chr4 (258-336)||(46722780-46722857)
[»] chr8 (3 HSPs)
chr8 (40-336)||(2812382-2812675)
chr8 (40-336)||(18606380-18606674)
chr8 (40-125)||(26858519-26858604)
[»] chr6 (5 HSPs)
chr6 (40-338)||(7640066-7640359)
chr6 (40-336)||(582722-583015)
chr6 (40-336)||(3886502-3886795)
chr6 (40-170)||(30383819-30383949)
chr6 (206-336)||(30383661-30383793)
[»] chr5 (5 HSPs)
chr5 (40-192)||(8403784-8403936)
chr5 (40-336)||(17172477-17172766)
chr5 (258-336)||(39684545-39684622)
chr5 (60-183)||(12105996-12106119)
chr5 (206-270)||(8403946-8404010)
[»] chr7 (10 HSPs)
chr7 (122-338)||(33335204-33335416)
chr7 (40-336)||(304009-304303)
chr7 (40-188)||(2829814-2829962)
chr7 (104-335)||(45809357-45809585)
chr7 (60-175)||(5480879-5480994)
chr7 (40-97)||(33335626-33335683)
chr7 (113-181)||(31174184-31174252)
chr7 (60-183)||(41532752-41532875)
chr7 (206-270)||(7527842-7527907)
chr7 (206-336)||(2829976-2830108)
[»] chr3 (5 HSPs)
chr3 (113-334)||(40285896-40286113)
chr3 (48-185)||(35734017-35734154)
chr3 (247-336)||(35733868-35733957)
chr3 (60-183)||(52724945-52725068)
chr3 (204-336)||(30343512-30343644)
[»] chr1 (3 HSPs)
chr1 (40-335)||(7493789-7494085)
chr1 (217-336)||(33409450-33409568)
chr1 (143-188)||(33409626-33409671)
[»] scaffold0049 (1 HSPs)
scaffold0049 (258-336)||(15634-15711)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 598
Target Start/End: Complemental strand, 19590679 - 19590094
Alignment:
Q  11 cacagaagactacaaataatataaaatgtttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaacta 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19590679 cacagaagattacaaataatataaaatgtttttcttgcaaatagtatggttatttacattgaaaaggacatttcaagtcattttagctaagatgcaacta 19590580  T
Q  111 tggatgaatttgagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaa 210  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||    
T  19590579 tggatgaatttgagtttttgaagggtcttcgagttcaattttcataaatagttactattagtttttatttcttttgttatagtttttttttg---tacaa 19590483  T
Q  211 tccgctattctaccgtgacttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatgagaata 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19590482 tccgctattctaccgtgacttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtatattttatgagaata 19590383  T
Q  311 ttttatataagtaatacttattgtgagtannnnnnngtctgtctagttagatcagtttaa-nnnnnnnnatatgtaaccacctcatagaaatattgctag 409  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  19590382 ttttatataagtaatacttattgtgagtatttttttgtctgtctagttagatcagtttaatttttttttatatgtaaccacctcatagaaatattgctag 19590283  T
Q  410 cttctccactggatttaaccaccctacattttattcatctggacgtcaagggtcaaaatcaaaacaattcacgtgtagcattgagctatgcaaaagcatc 509  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19590282 cttcgccattggatttaaccaccctacattttattcatctggacgtcaagggtcaaaatcaaaacaattcacgtgtagcattgagctatgcaaaagcatc 19590183  T
Q  510 atcgcaattcacgtgtatttaaccaccctacgtannnnnnnnagaggaactgactgggtaatatgttgttgcatttgttcggttatttg 598  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19590182 atcgcaattcacgtgtatttaaccaccctacgtattttttttagaggaactgattgggtaatatgttgttgcatttgttcggttatttg 19590094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 40 - 336
Target Start/End: Complemental strand, 5381091 - 5380797
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||| | ||||||||| |||||||||||| ||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||| |      
T  5381091 ttttctttcaaacaacttggttatctacattgaaaagaacattgcaagtcaatttagctcagatgcaattatggatgaatttgagtctttgaagggccga 5380992  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||             |||||||||||||||||| ||| |||||||| ||    
T  5380991 cgagttcaattttcataaatagccactattagtttttatttcttttgttgtagcttttttgg----tacaatccgctattctactgtggcttttttggta 5380896  T
Q  240 c--aatttgttattgctgca-tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtg 335  Q
    |  |||   ||||||| ||| ||||||||||||||| |  ||||| ||||||||  ||| |||||||| |||| ||||||||||||||||| ||| ||||    
T  5380895 caaaatagtttattgccgcattttttggtataatccgtacttgttgaatcaagt--gtatattttatgaagaacattttatataagtaatagttaatgtg 5380798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 36314270 - 36314122
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| ||||||||||||| ||| |||||||||| |||||| ||| ||  |||||||||||||||| ||||||||||||||||||||||||||| | |    
T  36314270 ttttctttcaaatagcttggtcattaacattgaaaaagacattgcaagtccatttagctaagatgcaattatggatgaatttgagtctttgaagggccgc 36314171  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgtt 188  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||    
T  36314170 cgagttcaattttcataagtagctattattagtttttatttcttttgtt 36314122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 40 - 338
Target Start/End: Original strand, 25280457 - 25280751
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||| ||  |||| || |||||||| ||||||||||||||||||||||||||||       
T  25280457 ttttcttgcaagtagcttggttatttacattgaaaaggacattgcaagtcggtttacctgagatgcaattatggatgaatttgagtctttgaagggtggt 25280556  T
Q  140 cgagttcaattttcataaatagttac--tattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttga 237  Q
    ||||||||||||| |||||||| |||  ||||||||||||||||||||||  |||             ||||||| | |||||||| |||  |||||||     
T  25280557 cgagttcaatttttataaatagctactatattagtttttatttcttttgtggtagtttttttg-----tacaatctgttattctactgtggtttttttgc 25280651  T
Q  238 tacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    || ||| ||||||||    ||||||||| |||||| || ||||| ||||||||  ||| |||||||| |||| ||||||||||||||||| |||||||||    
T  25280652 tagaatctgttattgtcttatttttggtttaatccgtttttgttgaatcaagt--gtatattttatgaagaacattttatataagtaataattattgtga 25280749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 1592787 - 1592639
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| ||||||||||||| ||| |||||||||| |||||| ||| ||  ||||| |||||||||| ||||||||||||||||||||||||||| | |    
T  1592787 ttttctttcaaatagcttggtcattaacattgaaaaagacattgcaagtccatttagttaagatgcaattatggatgaatttgagtctttgaagggccgc 1592688  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgtt 188  Q
    |||||||||||||||||| ||| || ||||||||||||| |||||||||    
T  1592687 cgagttcaattttcataagtagctattattagtttttatatcttttgtt 1592639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 92 - 336
Target Start/End: Complemental strand, 12563633 - 12563394
Alignment:
Q  92 tttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttcttttgttata 191  Q
    ||||||| | |||||| |||| |||||||||||| |||||||| |    | ||||| |||||||||| || |||||||||||||||||||||||||| ||    
T  12563633 tttagctcaaatgcaattatgaatgaatttgagtttttgaaggattaatgggttcagttttcataaacagctactattagtttttatttcttttgttgta 12563534  T
Q  192 gnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagta 291  Q
    |             ||||||| |||||||||  |||||||||||  |||||| ||||||||| | |||||| ||||||| | || ||||| ||||| ||     
T  12563533 gcttttttgg----tacaatctgctattctattgtgacttttttagtacaatatgttattgcggtatttttcgtataattcgttcttgttgaatcaggt- 12563439  T
Q  292 cgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
     | | |||||||| | || |||| |||||||||||| |||||||||    
T  12563438 -gaacattttatgaataacatttaatataagtaatagttattgtga 12563394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 41055613 - 41055488
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    |||||||||||||||||||||||  |  ||| ||||||| | |  ||| ||||||||||||||||||||| || ||||   |||||| | ||||||||||    
T  41055613 ttatttacattgaaaaggacattggatgtcagtttagctcatagacaattatggatgaatttgagtctttaaaaggtcgttgagttcgactttcataaat 41055514  T
Q  160 agttactattagtttttatttcttttg 186  Q
    || |||||||| ||||||||| |||||    
T  41055513 agctactatta-tttttattttttttg 41055488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 21278998 - 21279072
Alignment:
Q  109 tatggatgaatttgagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttctt 183  Q
    ||||||||||||||||| |||||||| ||  ||||||| | ||| |||||||| |||||| |||||| |||||||    
T  21278998 tatggatgaatttgagtatttgaaggatcgtcgagttcgacttttataaatagctactatcagttttaatttctt 21279072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 10585949 - 10586080
Alignment:
Q  206 tacaatccgctattctaccgtgacttttttgatacaatttgttattgctgcattttt--ggtataatccattattgtttaatcaagtacgtaaattttat 303  Q
    ||||||||| |||||||  |||  ||||||| |||||| |||| || | ||||||||  |||||||||| ||  |||| ||||||||  | | |||||||    
T  10585949 tacaatccgttattctattgtggtttttttggtacaatctgttgttaccgcatttttttggtataatccgttcatgttgaatcaagt--ggatattttat 10586046  T
Q  304 ga-gaatattttatataagtaatacttattgtga 336  Q
    || ||| ||||||||||||||||| |||||||||    
T  10586047 gaagaacattttatataagtaataattattgtga 10586080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 21613102 - 21612979
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    |||||||||||||||| |||||| ||| ||| || |  | | | |||  ||| |||||||||||||||||||||| || || ||||| | |||| |||||    
T  21613102 ttatttacattgaaaaagacattgcaagtcacttaaattcataagcagttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat 21613003  T
Q  160 agttactattagtttttatttctt 183  Q
    || |||||| | |||| |||||||    
T  21613002 agctactatcaattttaatttctt 21612979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 336
Target Start/End: Complemental strand, 1592626 - 1592494
Alignment:
Q  205 atacaatccgctattctaccgtgacttttttgatacaatttgttattgctgca--tttttggtataatccattattgtttaatcaagtacgtaaatttta 302  Q
    ||||||||| ||||||||| |||  |||||||||||||| || | |||| |||  ||||||||||||||| ||  || | ||||||  | ||| ||||||    
T  1592626 atacaatccactattctactgtggtttttttgatacaatctgctgttgccgcatttttttggtataatccgttcatgctgaatcaa--atgtatatttta 1592529  T
Q  303 tg-agaatattttatataagtaatacttattgtga 336  Q
    || |||| |||||||||| |||||| |||| ||||    
T  1592528 tgaagaacattttatataggtaatagttatcgtga 1592494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 336
Target Start/End: Complemental strand, 36314108 - 36313976
Alignment:
Q  205 atacaatccgctattctaccgtgacttttttgatacaatttgttattgctgca--tttttggtataatccattattgtttaatcaagtacgtaaatttta 302  Q
    ||||||||||||||||||| |||  ||||||| |||||| || | |||| |||  ||||||||||||||| ||  || | ||||||||  ||| |||| |    
T  36314108 atacaatccgctattctactgtggtttttttggtacaatctgctgttgccgcatttttttggtataatccgttcatgctgaatcaagt--gtatatttga 36314011  T
Q  303 tg-agaatattttatataagtaatacttattgtga 336  Q
    || |||| |||||||||| |||||| |||| ||||    
T  36314010 tgaagaacattttatataggtaatagttatggtga 36313976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 40 - 336
Target Start/End: Complemental strand, 31940170 - 31939878
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  || ||| ||||||| |||||||| |||||||||||||||||||||||||||||      
T  31940170 ttttctttcaaatagtttggttatttacattgaaaaagacattgtaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggtcgt 31940071  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||             |||||||||||||||||| ||| |||||||||||    
T  31940070 cgagttcaattttcataaatagctactattagtttttatttcttttgttgtagctttttttg----tacaatccgctattctactgtggcttttttgata 31939975  T
Q  240 caatttgttattgctgca-tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    ||||||||| |||| ||| ||||||||||||||  || | ||| ||||||||  ||| |||||||| |||| ||||||||||||||||| |||||||||    
T  31939974 caatttgttgttgccgcattttttggtataatctgttctcgttgaatcaagt--gtatattttatgaagaacattttatataagtaataattattgtga 31939878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 40 - 338
Target Start/End: Complemental strand, 19032739 - 19032446
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| |||||||| ||||||||||||||||| ||||||||||| |    
T  19032739 ttttcttgcaaatagcttgattatttacattgaaaaggaaattgcaagtcagtttagctcagatgcaattatggatgaatttgagtgtttgaagggtcgc 19032640  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
     |||||||||||||||| |||| |||||||||||||||||||||||||| |||             |||||| ||||||||||  ||| |||||||| ||    
T  19032639 tgagttcaattttcatatatagctactattagtttttatttcttttgttgtagattttttgg----tacaattcgctattctattgtggcttttttggta 19032544  T
Q  240 caatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttat-gagaatattttatataagtaatacttattgtgagt 338  Q
    |||| || |||| | | |||||||||||||||  || || |||||||||||  ||| |||||||  |||| |||||||||||||| ||  ||||||||||    
T  19032543 caatatgctattaccgtatttttggtataatctgttcttatttaatcaagt--gtatattttataaagaacattttatataagtagtaagtattgtgagt 19032446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 40 - 336
Target Start/End: Original strand, 13770118 - 13770412
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||| ||||||||||| |||||||||||| ||||| ||| ||| ||||||| | |||||| ||||||||||||||||||||||||||| |      
T  13770118 ttttctttcaaacagcttggttatctacattgaaaagaacattgcaagtcaatttagctcaaatgcaattatggatgaatttgagtctttgaagggccga 13770217  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||| |||             |||||||||||||||||| ||| |||||||| ||    
T  13770218 cgaattcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttgg----tacaatccgctattctactgtggcttttttggta 13770313  T
Q  240 c--aatttgttattgctgca-tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtg 335  Q
    |  |||   ||||||| |||  |||||||||||||| || ||||| |||||| ||  || |||||||| |||| ||||||||||||||||| ||||||||    
T  13770314 caaaatagtttattgccgcagcttttggtataatccgttcttgttgaatcaaata--tatattttatgaagaacattttatataagtaatagttattgtg 13770411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 24783277 - 24783133
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    |||||||||||||| |||||||||| ||||| ||||||||||| ||| ||| ||||||| |  ||||| |||||||||||||||||||||||| |||| |    
T  24783277 ttttcttgcaaatatcttggttattcacattaaaaaggacattgcaagtcagtttagctca--tgcaattatggatgaatttgagtctttgaatggtcgc 24783180  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttg 186  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||||    
T  24783179 cgagttcgattttcataaatagctactattagtttttgtttcttttg 24783133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 35 - 336
Target Start/End: Complemental strand, 32823483 - 32823184
Alignment:
Q  35 aatgtttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagg 134  Q
    |||| ||||||| |||||||||||||||||||||||||||| |||||| ||| |||  ||| || | |||||| ||||||||||||| ||||||| || |    
T  32823483 aatgattttctttcaaatagcttggttatttacattgaaaaagacattgcaagtcagattacctcatatgcaattatggatgaattttagtctttaaaag 32823384  T
Q  135 gtctccgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttt 234  Q
    | | ||||||| |||| |||||||||| ||||||||||||||||||||||||||  ||             |||||||||||||||||| ||| ||||||    
T  32823383 gccgccgagtttaattatcataaatagctactattagtttttatttcttttgttggagcttttttgg----tacaatccgctattctactgtggcttttt 32823288  T
Q  235 tgatacaatttgttattgctgcattttt--ggtataatc-cattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatactta 330  Q
    || |||||| |||| |||| | ||||||  ||||||||| | ||  |||| ||||||||  ||| |||||||| |||| ||||||||||||||||| |||    
T  32823287 tggtacaatctgttgttgccgtattttttcggtataatctcgttcatgttaaatcaagt--gtatattttatgaagaacattttatataagtaatagtta 32823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 24783107 - 24783005
Alignment:
Q  230 ttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatact 328  Q
    ||||||| |||||| |||| |||||||||||||||||||||   || ||| ||| ||||     || |||||||| |||| ||||||||||||||||| |    
T  24783107 ttttttggtacaatatgttgttgctgcatttttggtataatatgttcttggttagtcaa-----tatattttatgaagaacattttatataagtaatagt 24783013  T
Q  329 tattgtga 336  Q
    ||||||||    
T  24783012 tattgtga 24783005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 30226396 - 30226273
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    |||||||||||||||| |||||| ||| ||| || |  | | | |||  ||| |||||||||||||||||||||| || || ||||| | |||| |||||    
T  30226396 ttatttacattgaaaaagacattgcaagtcacttaaattcataagcagttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat 30226297  T
Q  160 agttactattagtttttatttctt 183  Q
    || |||||| | |||| |||||||    
T  30226296 agctactatcaattttaatttctt 30226273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 8673673 - 8673760
Alignment:
Q  250 ttgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatgag-aatattttatataagtaatacttattgtgagt 338  Q
    |||| |||||||| ||||||||  || ||||| ||||||||  ||| |||||||||  || ||||||||||||||||| |||||||||||    
T  8673673 ttgccgcattttttgtataatcagttcttgttgaatcaagt--gtatattttatgaacaacattttatataagtaatagttattgtgagt 8673760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 46722780 - 46722857
Alignment:
Q  258 tttttggtataatccattattgtttaatcaagtacgtaaattttatga-gaatattttatataagtaatacttattgtga 336  Q
    ||||||||||||||| ||  |||| ||||||||  | | ||||||||| ||| ||||||||||||||||| |||||||||    
T  46722780 tttttggtataatccgttcatgttgaatcaagt--ggatattttatgaagaacattttatataagtaataattattgtga 46722857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 40 - 336
Target Start/End: Original strand, 2812382 - 2812675
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||| ||| |||| || |||||||| ||||||||||||||||||||||||| | | |    
T  2812382 ttttctttcaaatagcttggttatttacattgaaaaagacattgcaagtcagtttaactcagatgcaattatggatgaatttgagtctttgaagagccac 2812481  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| |||             || ||||||||||||||| |||  ||||||| ||    
T  2812482 cgagttcaattttcataaatagctactattaatttttatttcttttgttgtagtttttttgg----tataatccgctattctactgtggtttttttggta 2812577  T
Q  240 caatttgttattgctgca--tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    ||||||||| |||| |||  ||||||||||||||| ||  |||||| ||||||   || |||||||| |||| ||||||||||||| ||| |||||||||    
T  2812578 caatttgttgttgccgcatttttttggtataatccgttcatgtttagtcaagt--ttatattttatgaagaacattttatataagtcatagttattgtga 2812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 40 - 336
Target Start/End: Original strand, 18606380 - 18606674
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||||||||| || ||| |||||||||| |||||| ||| ||  |||||||||||||||| |||||||||||||| |||||||||||  | |    
T  18606380 ttttctttcaaatagcttagtcattaacattgaaaaagacattgcaagtccatttagctaagatgcaattatggatgaatttgggtctttgaaggaccgc 18606479  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||| |||            ||||||||||||||||||| |||  ||||||| ||    
T  18606480 cgagttcaattttcataagtagctattattagtttttatttcttttgttgtagcttttttg----atacaatccgctattctactgtggtttttttggta 18606575  T
Q  240 caatttgttattgctgca---tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtg 335  Q
    |||| |||| |||| |||   ||||||||||||||| ||  || | ||||||||  ||| |||||||| |||| |||||||||| |||||| |||| |||    
T  18606576 caatctgttgttgccgcattttttttggtataatccgttcatgctgaatcaagt--gtatattttatgaagaacattttatataggtaatagttatcgtg 18606673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 26858519 - 26858604
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagt 125  Q
    ||||| || |||||||||||||||| |||||||||||| |||| ||||||| ||||||| ||| |||| |||||||||||||||||    
T  26858519 ttttcatgaaaatagcttggttattgacattgaaaaggtcattgcaaatcagtttagctcagaggcaaatatggatgaatttgagt 26858604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 40 - 338
Target Start/End: Original strand, 7640066 - 7640359
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||| ||||||||  ||||||||||||||||||||||||||| ||| |||  |||||| |||||||| ||||||||||||||||| |||||| ||||      
T  7640066 ttttcatgcaaataatttggttatttacattgaaaaggacattgcaagtcaacttagctcagatgcaattatggatgaatttgagtttttgaaaggtcgt 7640165  T
Q  140 cgagttcaattttcataaatagttac--tattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttga 237  Q
    ||||||||||||||| |||||| |||  ||||||||||||||||||||||| |||             |||||||||||||||||| |||  |||||||     
T  7640166 cgagttcaattttcacaaatagctactatattagtttttatttcttttgttgtagtttttttg-----tacaatccgctattctactgtg-gttttttgg 7640259  T
Q  238 tacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    |||||| |||||||||  ||||||| ||||||| | || ||||||||||||||  ||| |||||||| |||| ||||||||||||||||| |||||||||    
T  7640260 tacaatatgttattgccccattttttgtataattcgttcttgtttaatcaagt--gtatattttatgaagaacattttatataagtaatatttattgtga 7640357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 40 - 336
Target Start/End: Complemental strand, 583015 - 582722
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| ||||||||||||| ||| |||||||||| |||||| ||| |   |||||||||||||||| |||||||||||||||||||||||||||   |    
T  583015 ttttctttcaaatagcttggtcattaacattgaaaaagacattgcaagttcatttagctaagatgcaattatggatgaatttgagtctttgaagggcagc 582916  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||| |||            ||||||||||||||||||| |||  ||||||||||    
T  582915 cgagttcaattttcataagtagctattattagtttttatttcttttgttgtagcttttttg----atacaatccgctattctactgtggtttttttgata 582820  T
Q  240 caatttgttattgctgca--tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    |||| || | |||| |||  ||||| ||||||||| ||  || | ||||||||  ||| |||||||| |||| |||||||||| |||||| |||| ||||    
T  582819 caatctgctgttgccgcatttttttagtataatccgttcatgctgaatcaagt--gtatattttatgaagaacattttatataggtaatagttatcgtga 582722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 40 - 336
Target Start/End: Original strand, 3886502 - 3886795
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||||||||| || ||| |||||||||| |||||| ||| ||  |||||||||||||||| ||||||||||||||||||||||| ||| | |    
T  3886502 ttttctttcaaatagcttagtcattaacattgaaaaagacattgcaagtccatttagctaagatgcaattatggatgaatttgagtctttgacgggccgc 3886601  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    ||||||||||||||| || |||||| ||||| ||||||||||||||||| |||            ||||||||||||||||||| |||  ||||||| ||    
T  3886602 cgagttcaattttcacaagtagttattattaatttttatttcttttgttgtagcttttttg----atacaatccgctattctactgtggtttttttggta 3886697  T
Q  240 caatttgttattgctgca--tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    |||| || | |||| |||  ||||||||||||||| ||  || | ||||||||  ||| |||||||| |||| |||||||||| |||||| |||| ||||    
T  3886698 caatctgctgttgccgcatttttttggtataatccgttcatgctgaatcaagt--gtatattttatgaagaacattttatataggtaatagttatcgtga 3886795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 30383949 - 30383819
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||| ||||||||||| ||| |||||||| ||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||| |      
T  30383949 ttttctttcaaacagcttggttatctacgttgaaaagaacattgcaagtcaatttagctcagatgcaattatggatgaatttgagtctttgaagggccga 30383850  T
Q  140 cgagttcaattttcataaatagttactatta 170  Q
    |||||||||||||||||||||| ||||||||    
T  30383849 cgagttcaattttcataaatagctactatta 30383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 30383793 - 30383661
Alignment:
Q  206 tacaatccgctattctaccgtgacttttttgatacaattt-gtt-attgctgcatttttg-gtataatccattattgtttaatcaagtacgtaaatttta 302  Q
    |||||||||||||||||  ||| |||||||| |||||  | ||| ||||| ||||||||  ||||| ||| || ||||| ||||||||  ||| ||||||    
T  30383793 tacaatccgctattctattgtggcttttttggtacaaaatagttcattgccgcatttttttgtatactccgttcttgttgaatcaagt--gtatatttta 30383696  T
Q  303 tga-gaatattttatataagtaatacttattgtga 336  Q
    ||| ||| ||||||||||||||||| |||||||||    
T  30383695 tgaagaacattttatataagtaatagttattgtga 30383661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 9e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 8403784 - 8403936
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| ||| ||| |||| ||  ||||||| ||||||||||||||||||||||||||||| |    
T  8403784 ttttcttgcaaatagtttggttacttacattgaaaagaacattgcaagtcagtttatctctgatgcaattatggatgaatttgagtctttgaagggtcgc 8403883  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatag 192  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  8403884 cgagttcaattttcataaatagctactattaatttttatttcttttgttatag 8403936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 40 - 336
Target Start/End: Original strand, 17172477 - 17172766
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| ||||||||||||||||| |||| |||||||||| | |||||   ||||| | |||||||| ||||||||||||||||||||||||||| |      
T  17172477 ttttctttcaaatagcttggttattaacatcgaaaaggacaatgcaaatg--tttaggtcagatgcaattatggatgaatttgagtctttgaagggccgt 17172574  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||             |||||||| || |||||| |||  ||||||  ||    
T  17172575 cgagttcaattttcataaatagccactattagtttttatttcttttgttgtagcttttttgg----tacaatccactgttctactgtggattttttagta 17172670  T
Q  240 caatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtga 336  Q
    |||| | ||||||| |||||||| ||||||| | || |||||   ||||||  ||| |||||||| |||| ||||||||||||||||| |||||||||    
T  17172671 caatattttattgccgcatttttagtataattcgttcttgttggttcaagt--gtatattttatgaagaacattttatataagtaatagttattgtga 17172766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 39684622 - 39684545
Alignment:
Q  258 tttttggtataatccattattgtttaatcaagtacgtaaattttatga-gaatattttatataagtaatacttattgtga 336  Q
    ||||||||||||||| || ||||| ||||||||  ||| ||||||||| ||| ||||||||||||||||| |||||||||    
T  39684622 tttttggtataatccgttcttgttgaatcaagt--gtatattttatgaagaacattttatataagtaataattattgtga 39684545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 12105996 - 12106119
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    |||||||||||||||| |||||| ||| |||  | | || | | |||  ||| |||||||||||||||||||||| || |||||||| | |||| |||||    
T  12105996 ttatttacattgaaaaagacattgcaagtcacataaactcataagcagttatagatgaatttgagtctttgaaggatcgccgagttcgactttcgtaaat 12106095  T
Q  160 agttactattagtttttatttctt 183  Q
    || |||||| | |||| |||||||    
T  12106096 agctactatcaattttaatttctt 12106119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 8403946 - 8404010
Alignment:
Q  206 tacaatccgctattctaccgtgacttttttgatacaatttgttattgctgcatttttggtataat 270  Q
    |||||||||||||||||  ||| || ||||  |||||| | |||||||||||||||| |||||||    
T  8403946 tacaatccgctattctattgtggctctttttgtacaatatattattgctgcattttttgtataat 8404010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 338
Target Start/End: Complemental strand, 33335416 - 33335204
Alignment:
Q  122 gagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattct 221  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||             ||||||||||||||||    
T  33335416 gagtctttcaagggtcgccgagttcaattttcataaatagctactattagtttttatttatattgttgtagcttttttgg----tacaatccgctattct 33335321  T
Q  222 accgtgacttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatgagaatattttatataag 321  Q
    ||||| ||||| ||| |||||||| ||||||| |||||||||||| ||| | || ||||||||||||||| ||| ||||||| |||||||||||||||||    
T  33335320 accgtcactttgttggtacaattttttattgccgcatttttggtacaattcgttcttgtttaatcaagtatgtatattttattagaatattttatataag 33335221  T
Q  322 taatacttattgtgagt 338  Q
    ||||| |||||||||||    
T  33335220 taatagttattgtgagt 33335204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 40 - 336
Target Start/End: Complemental strand, 304303 - 304009
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||| ||||||||||| || |||||||||||||||  || ||| ||||||| |||||||| ||||||||||||||||||||||||||| |      
T  304303 ttttctttcaaacagcttggttatctatattgaaaaggacattgtaagtcaatttagctcagatgcaattatggatgaatttgagtctttgaagggccga 304204  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgacttttttgata 239  Q
    |||||||| |||| | |||||| |||||||||||||||||||||||||| |||             |||||||||||||||||| |||||||||||| ||    
T  304203 cgagttcatttttaaaaaatagctactattagtttttatttcttttgttgtagcttttttgg----tacaatccgctattctactgtgacttttttggta 304108  T
Q  240 c--aatttgttattgctgca-tttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttattgtg 335  Q
    |  |||   ||||||| | | ||||||||||||||| || ||||| ||||||||  ||| |||||||| ||||  |||||||||||||||| ||||||||    
T  304107 caaaatagtttattgccgtattttttggtataatccgttcttgttgaatcaagt--gtatattttatgaagaacgttttatataagtaatagttattgtg 304010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 2829814 - 2829962
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctc 139  Q
    ||||||| |||| ||||||||||| || ||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||| |      
T  2829814 ttttctttcaaacagcttggttatctatattgaaaaggacattgcaagtcaatttagctcagatgcaattatggatgaatttgagtctttgaagggccga 2829913  T
Q  140 cgagttcaattttcataaatagttactattagtttttatttcttttgtt 188  Q
    |||||||| |||| | |||||| ||||||||||||||||||||||||||    
T  2829914 cgagttcatttttaaaaaatagctactattagtttttatttcttttgtt 2829962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 104 - 335
Target Start/End: Complemental strand, 45809585 - 45809357
Alignment:
Q  104 gcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnn 203  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||               
T  45809585 gcaattatggatgaatttgagtctttgaagggccgccgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttgg-- 45809488  T
Q  204 aatacaatccgctattctaccgtgacttttttgatacaatttgttattgctgca--tttttggtataatccattattgtttaatcaagtacgtaaatttt 301  Q
      ||||||||| | |||||| ||| |||||||| |||||| |||| |||| |||  ||||||||||||||| ||  |||| ||||||||  ||| |||||    
T  45809487 --tacaatccgtttttctactgtgtcttttttggtacaatctgttgttgccgcatttttttggtataatccgttcatgttgaatcaagt--gtatatttt 45809392  T
Q  302 atg-agaatattttatataagtaatacttattgtg 335  Q
    ||| |||| ||||||||||||||||| ||||||||    
T  45809391 atgaagaacattttatataagtaatagttattgtg 45809357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 5480879 - 5480994
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    ||||||||||||||||| ||||| ||| ||| || | || | | |||  ||||||||||||||||||||| |||| |   ||||||| | ||||||||||    
T  5480879 ttatttacattgaaaagaacattgcaagtcacttaaacttataggcagttatggatgaatttgagtctttcaaggattgtcgagttcgactttcataaat 5480978  T
Q  160 agttactattagtttt 175  Q
    || |||||| ||||||    
T  5480979 agctactatcagtttt 5480994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 33335683 - 33335626
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacatttcaaatcattttagc 97  Q
    ||||||||||||||| | ||||||||||||||||||||| ||| ||| ||| ||||||    
T  33335683 ttttcttgcaaatagttaggttatttacattgaaaaggatattgcaagtcaatttagc 33335626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 31174252 - 31174184
Alignment:
Q  113 gatgaatttgagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttc 181  Q
    |||||||||||||||||||| | ||  ||||||| | |||||||||||  |||||||| ||||||||||    
T  31174252 gatgaatttgagtctttgaaagatcgtcgagttcgactttcataaataactactattaatttttatttc 31174184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 41532752 - 41532875
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    |||||||||||||||| |||||| ||| ||| || |  | | | |||  ||| |||||||||||||||||||||| || || ||||| | |||| |||||    
T  41532752 ttatttacattgaaaaagacattgcaagtcacttaaattcataagcagttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat 41532851  T
Q  160 agttactattagtttttatttctt 183  Q
    || |||||| | |||| |||||||    
T  41532852 agctactatcaattttaatttctt 41532875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 7527842 - 7527907
Alignment:
Q  206 tacaatccgctattctaccgtgacttttttgatacaatttgttattgctgca-tttttggtataat 270  Q
    ||||||| |||||||||   |||||||||| ||||||||||||||||| | | |||||||||||||    
T  7527842 tacaatctgctattctattatgacttttttaatacaatttgttattgccgtattttttggtataat 7527907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 2829976 - 2830108
Alignment:
Q  206 tacaatccgctattctaccgtgacttttttgatacaatttg--ttattgctgcattttt-ggtataatccattattgtttaatcaagtacgtaaatttta 302  Q
    |||||||||||||||||  ||| |||||||| |||||  |   ||||||| | |||||| |||||||||| || ||||  ||||||||  ||| ||||||    
T  2829976 tacaatccgctattctattgtggcttttttggtacaaaatagtttattgccgtattttttggtataatccgttcttgtagaatcaagt--gtatatttta 2830073  T
Q  303 tga-gaatattttatataagtaatacttattgtga 336  Q
    ||| |||  |||||||||||||||| |||||||||    
T  2830074 tgaagaacgttttatataagtaatatttattgtga 2830108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 113 - 334
Target Start/End: Original strand, 40285896 - 40286113
Alignment:
Q  113 gatgaatttgagtctttgaagggtctccgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatc 212  Q
    ||||||||||||| |||||| |  |  |||||||||||||||||||||| |||||||||||||||||||||||||| |||             |||||||    
T  40285896 gatgaatttgagtttttgaaagtccatcgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttttg---tacaatc 40285992  T
Q  213 cgctattctaccgtgacttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatat 311  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| || ||||| ||||||||  ||| ||||| || |||| ||    
T  40285993 cgctattctaccgtggcttttttgatacaatatgttattgctgcatttttagtataatccgttcttgttgaatcaagt--gtatattttgtgaagaacat 40286090  T
Q  312 tttatataagtaatacttattgt 334  Q
    ||||||||||||||| |||||||    
T  40286091 tttatataagtaataattattgt 40286113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 35734154 - 35734017
Alignment:
Q  48 caaatagcttggttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttca 147  Q
    |||||||||||||||| |||||||||||||||||| ||| ||| ||||||| |||||||| |||| |||||||||||||||||||||| | |||||||||    
T  35734154 caaatagcttggttatctacattgaaaaggacattgcaagtcaatttagctcagatgcaattatgaatgaatttgagtctttgaagggccgccgagttca 35734055  T
Q  148 attttcataaatagttactattagtttttatttctttt 185  Q
    ||||| ||||  || |||| ||||||||||||||||||    
T  35734054 atttttataagcagctactgttagtttttatttctttt 35734017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 35733957 - 35733868
Alignment:
Q  247 ttattgctgcattttt-ggtataatccattattgtttaatcaagtacgtaaattttatga-gaatattttatataagtaatacttattgtga 336  Q
    ||||||| |||||||| ||||||| || || ||||| ||||||||  ||| ||||||||| ||||||||||||||| ||||| |||||||||    
T  35733957 ttattgccgcattttttggtataacccgttcttgttgaatcaagt--gtatattttatgaagaatattttatataattaatagttattgtga 35733868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 52724945 - 52725068
Alignment:
Q  60 ttatttacattgaaaaggacatttcaaatcattttagctaagatgcaactatggatgaatttgagtctttgaagggtctccgagttcaattttcataaat 159  Q
    |||||||||||||||| |||||| ||| ||| || |  | | | |||  ||| |||||||||||||||||||||| || || ||||| | |||| |||||    
T  52724945 ttatttacattgaaaaagacattgcaagtcacttaaattcataagcatttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat 52725044  T
Q  160 agttactattagtttttatttctt 183  Q
    || |||||| | |||| |||||||    
T  52725045 agctactatcaattttaatttctt 52725068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 336
Target Start/End: Original strand, 30343512 - 30343644
Alignment:
Q  204 aatacaatccgctattctaccgtgacttttttgatacaatttgttattgctgcattttt--ggtataatccattattgtttaatcaagtacgtaaatttt 301  Q
    ||||||||||| |||||||  |||  ||||||| |||||| |||| || | ||||||||  |||||||||| ||  |||| ||||||||  | | |||||    
T  30343512 aatacaatccgttattctattgtgg-ttttttggtacaatatgttgttaccgcatttttttggtataatccgttcatgttgaatcaagt--ggatatttt 30343608  T
Q  302 atga-gaatattttatataagtaatacttattgtga 336  Q
    |||| ||| ||||||||||||||||| |||||||||    
T  30343609 atgaagaacattttatataagtaataattattgtga 30343644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 40 - 335
Target Start/End: Original strand, 7493789 - 7494085
Alignment:
Q  40 ttttcttgcaaatagcttggttatttacattgaaaaggacattt----caaatcattttagctaagatgcaactatggatgaatttgagtctttgaaggg 135  Q
    ||||||| ||||||||||||||||||||||| ||||  | || |    ||  ||| ||||||| |||||||| ||||||| |||||||||||||||||||    
T  7493789 ttttctttcaaatagcttggttatttacattaaaaaaaatatatattgcaggtcagtttagctcagatgcaattatggataaatttgagtctttgaaggg 7493888  T
Q  136 tctccgagttcaattttcataaatagttactattagtttttatttcttttgttatagnnnnnnnnnnnaatacaatccgctattctaccgtgactttttt 235  Q
       ||||||||||||||||||||||| |||||||||||||||||||||||||| |||             ||||||||| | |||||| ||| |||||||    
T  7493889 ctgccgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttgg----tacaatccgtttttctacggtgtctttttt 7493984  T
Q  236 gatacaatttgttattgc--tgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatattttatataagtaatacttatt 332  Q
    | || ||| |||| ||||  |   ||||||||||||||| ||  |||| ||||||||  ||| |||||||| |||||||||||||||||||||| |||||    
T  7493985 ggtataatctgttgttgccatatttttttggtataatccgttcatgttgaatcaagt--gtatattttatgaagaatattttatataagtaatagttatt 7494082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 336
Target Start/End: Complemental strand, 33409568 - 33409450
Alignment:
Q  217 attctaccgtgacttttttgatacaatttgttattgctgcatttttggtataatccattattgtttaatcaagtacgtaaattttatg-agaatatttta 315  Q
    ||||||| ||||||||||||| ||||| ||||||||| ||||||||   ||||| | || ||||| ||||||||  ||| |||||||| |||| ||||||    
T  33409568 attctactgtgacttttttgacacaatatgttattgccgcatttttaacataattcgttcttgttgaatcaagt--gtatattttatgaagaacatttta 33409471  T
Q  316 tataagtaatacttattgtga 336  Q
    ||||||||||| |||||||||    
T  33409470 tataagtaatagttattgtga 33409450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 33409671 - 33409626
Alignment:
Q  143 gttcaattttcataaatagttactattagtttttatttcttttgtt 188  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33409671 gttcaattttcataaatagctactattagtttttatttcttttgtt 33409626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 15634 - 15711
Alignment:
Q  258 tttttggtataatccattattgtttaatcaagtacgtaaattttatga-gaatattttatataagtaatacttattgtga 336  Q
    ||||||||||||||| || ||||| ||||||||  ||| ||||||||| ||| ||||||||||||||||| |||||||||    
T  15634 tttttggtataatccgttcttgttgaatcaagt--gtatattttatgaagaacattttatataagtaatagttattgtga 15711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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