View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4124_low_5 (Length: 607)
Name: NF4124_low_5
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 351
Target Start/End: Complemental strand, 8923017 - 8922671
Alignment:
| Q |
5 |
gacatttttgttgatatgattcatagatatttttcctatggtgtgttttgagttttgggaaatatggcatgatggcaggtgttgaaagataccggttttc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8923017 |
gacatttttgttgatatgattcatagatatttttcctatggtgtgttttgagttttgggaaatatggcatgatggcaggtgttgaaagatacgggttttc |
8922918 |
T |
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| Q |
105 |
atggtgtagtttattcagtgttgtcaatcacggatcacagcaaatagcgggttttttaaattcaactacgctattgtggtataatgnnnnnnnacagccc |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8922917 |
atgatgtagtttattcagtgttgtcaatcacggatcacagcaaatagcgggttttttaaattcaactacgctattgtggtataatgtttttttacagccc |
8922818 |
T |
|
| Q |
205 |
tttgaactaaacagtgaatcacagaacaatagtgatttgctcaaattccaccatgctgtagcgcctctatttgacaacactgattttattcattgtagag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8922817 |
tttgaactaaacagtgaatcacagaacaatagtgatttgctcaaattccaccatgctgtagcgcctctatttgacaacactgattttattcattgtagag |
8922718 |
T |
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| Q |
305 |
ttttttctttgtttagagtctaaactttctatcactatatcttgtta |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8922717 |
ttttttctttgtttagagtctaaactttctatcactatatcttgtta |
8922671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 385 - 592
Target Start/End: Complemental strand, 8922637 - 8922430
Alignment:
| Q |
385 |
ccatttgaaaaaacatactttgacctcaattttgattgaatgaaaaaggttgaacacatgttggctacatttttgtggcttataaactagtagggtgaga |
484 |
Q |
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| T |
8922637 |
ccatttgaaaaaacatactttgacttcaattttgattgaatgaaaaaggttgaacacatgttggctacatttttgtggcttataaactagtagggtgaga |
8922538 |
T |
|
| Q |
485 |
caagtaagggctatgataaaactctcaccttgatataacggttacttgatatgttcagtcacatctgcatccctttttcaaagtgttattgacttttttg |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8922537 |
caagtaagggctatgataaaactctcaccttgatataacggttacttgatatgttcagtcacatctgcatccctttttcaaagtgttattgacttttttg |
8922438 |
T |
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| Q |
585 |
tgaatatt |
592 |
Q |
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|||||||| |
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| T |
8922437 |
tgaatatt |
8922430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 585
Target Start/End: Complemental strand, 8923106 - 8923007
Alignment:
| Q |
486 |
aagtaagggctatgataaaactctcaccttgatataacggttacttgatatgttcagtcacatctgcatccctttttcaaagtgttattgacttttttgt |
585 |
Q |
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|||||||| || |||||||||||||||||||||||| ||||| |||||||||| | ||| |||| |||||||||||||| |||| ||| ||||||| |
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| T |
8923106 |
aagtaaggaataagataaaactctcaccttgatataatggttaaatgatatgttctgctacacatgcagccctttttcaaagtattatcgacatttttgt |
8923007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 49983175 - 49983119
Alignment:
| Q |
228 |
gaacaatagtgatttgctcaaattccaccatgctgtagcgcctctatttgacaacac |
284 |
Q |
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|||||||||| ||||| ||||||||| | ||||||||||||| |||||||||||||| |
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| T |
49983175 |
gaacaatagtaatttgttcaaattccgctatgctgtagcgccactatttgacaacac |
49983119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 26481471 - 26481417
Alignment:
| Q |
231 |
caatagtgatttgctcaaattccaccatgctgtagcgcctctatttgacaacact |
285 |
Q |
| |
|
|||||| |||||| ||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
26481471 |
caatagagatttgttcaaattcccccatgttgtagcgccgctatttgacaacact |
26481417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 26273053 - 26273102
Alignment:
| Q |
204 |
ctttgaactaaacagtgaatcacagaacaatagtgatttgctcaaattcc |
253 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
26273053 |
ctttgtactaaacagcgtatcacagaacaatagtgatttattcaaattcc |
26273102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 27400560 - 27400512
Alignment:
| Q |
228 |
gaacaatagtgatttgctcaaattccaccatgctgtagcgcctctattt |
276 |
Q |
| |
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||||||||| |||||| ||||||||||||||||| ||| ||| |||||| |
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| T |
27400560 |
gaacaatagcgatttgttcaaattccaccatgctatagtgccgctattt |
27400512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 52695404 - 52695356
Alignment:
| Q |
205 |
tttgaactaaacagtgaatcacagaacaatagtgatttgctcaaattcc |
253 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
52695404 |
tttgtactaaatagtgtatcacagaacaatagtgattggctcaaattcc |
52695356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 4542832 - 4542776
Alignment:
| Q |
122 |
gtgttgtcaatcacggatcacagcaaatagcgggttttttaaattcaactacgctat |
178 |
Q |
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|||||||||||| |||||| ||| |||||| || || ||||||||| |||||||||| |
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| T |
4542832 |
gtgttgtcaatcgcggatctcagaaaatagtggtttgtttaaattccactacgctat |
4542776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 18679523 - 18679491
Alignment:
| Q |
119 |
tcagtgttgtcaatcacggatcacagcaaatag |
151 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
18679523 |
tcagtgttgtcaatcacggatcacagaaaatag |
18679491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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