View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4124_low_7 (Length: 554)
Name: NF4124_low_7
Description: NF4124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4124_low_7 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 1338507 - 1338945
Alignment:
| Q |
1 |
acagtacataatatcaattaaagataaggaaccttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338507 |
acagtacataatatcaattaaagatagggaaccttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcat |
1338606 |
T |
|
| Q |
101 |
acagcataccacttggtgcactttgagagtcagccaaataattcaccatctctggagtagaaaacataagattcaaaaccagttcaggtatatgatgaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1338607 |
acagcataccacttggtgcactttgagagtcagccaaataattcaccatctctggagtagaaaacataagattcaaaaccagttcaggttaatgatgaag |
1338706 |
T |
|
| Q |
201 |
gaagcaagacaaattttctaaccacatgacatgtaacaacatgcaatgaccacatacacaatcctagttataaaaaagaccagagtaagacaaaatgcag |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1338707 |
gaagcaagacaaattttctaaccacgtgacatgtaacaacatgcaatgaccacatacacaatcctagttataaaaaagaccagagtaagacaaaatgcgg |
1338806 |
T |
|
| Q |
301 |
ccagtacattttagctgataaatagagattgtatgaatcttattctaagtgagcttgatatttaatttaaacacattgaaatatgaaacattcattcatn |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1338807 |
ccagtacattttagctgataaatagagattgtatgaatcttactctaagtgagcttgatatttaatttaaacacattgaaatatgaaacattcattcata |
1338906 |
T |
|
| Q |
401 |
nnnnnnccgctgccatctttcattgcaatgacagagtac |
439 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
1338907 |
aaaaaaccgctgacatctttcattgcaatgacagagtac |
1338945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 1338996 - 1339042
Alignment:
| Q |
490 |
ataccacttctctttaatctgatatatttttgaaaatcagtacgagg |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1338996 |
ataccacttctctttaatctgatatatttttgaaaatcagtacgagg |
1339042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 433
Target Start/End: Original strand, 31940327 - 31940770
Alignment:
| Q |
5 |
tacataatatcaattaaagataaggaaccttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcatacag |
104 |
Q |
| |
|
||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
31940327 |
tacataatatcaattcaagatacggtaccttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacag |
31940426 |
T |
|
| Q |
105 |
cataccacttggtgcactttgagagtcagccaaataattcaccatctctggagtagaaaacataagattcaaaaccagttcaggtatatgatgaaggaag |
204 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||| |
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|
| T |
31940427 |
cataccacttggtgcactatgatagtcagcagaataattcgccatctctggagtagaaaacacaagattcaacaccagttcagtttactgatgaaggaag |
31940526 |
T |
|
| Q |
205 |
caagacaaattttctaaccacatgacatgtaacaacatgcaatgaccacatacacaatcctagttataaaaaagaccagagtaagacaaa---------- |
294 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
31940527 |
caagacagattttctaaccatatgacatgtaacaacatgcaatgaccacatacacaattctagttataaaaaagaccagagtgagacaaaatgcagttca |
31940626 |
T |
|
| Q |
295 |
-----atgcagccagtacattttagctgataaatagagattgtatgaatcttattctaagtgagcttgatatttaatttaaacacattgaaatatgaaac |
389 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||| |||| || ||||||||||||| | | ||||||||||||||| |||| |
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|
| T |
31940627 |
tatatatgcagccagtacattttagctgataagtagagattgtgtgaatcttactctaggtaagcttgatatttagtatgaacacattgaaatataaaac |
31940726 |
T |
|
| Q |
390 |
attcattcatnnnnnnnccgctgccatctttcattgcaatgaca |
433 |
Q |
| |
|
|||||||||| | |||| |||||||||||||||||||| |
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|
| T |
31940727 |
attcattcataaaaaaactgctgacatctttcattgcaatgaca |
31940770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 31940833 - 31940878
Alignment:
| Q |
491 |
taccacttctctttaatctgatatatttttgaaaatcagtacgagg |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31940833 |
taccacttctctttaatctgatatatttttgaaaatcagtacgagg |
31940878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 13536880 - 13537012
Alignment:
| Q |
21 |
aagataaggaaccttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcatacagcataccacttggtgca |
120 |
Q |
| |
|
|||||| |||||||||| | |||||||||||| ||||||||||| ||||| | ||||||| ||| || |||||||| ||||| |||||||||| |
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|
| T |
13536880 |
aagatagggaaccttcttgtgtggaatgtggcagactctctcataatcatctttgtttaattccaatgggaagtgatcatatagcattccacttggtgtg |
13536979 |
T |
|
| Q |
121 |
ctttgagagtcagccaaataattcaccatctct |
153 |
Q |
| |
|
||| | ||||||| ||||||||||||||||| |
|
|
| T |
13536980 |
ttttcatagtcagctgaataattcaccatctct |
13537012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 9390656 - 9391074
Alignment:
| Q |
1 |
acagtacataatatcaattaaagataaggaaccttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcat |
100 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
9390656 |
acagtacataatatcaattcaagatatgataccttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggtctgtgatcat |
9390755 |
T |
|
| Q |
101 |
acagcataccacttggtgcactttgagagtcagccaaataattcaccatctctggagtagaaaacataagattcaaaaccagttcaggtatatgatgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| |
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|
| T |
9390756 |
acagcataccacttggtgcactttgagagtcagcagaataattcaccatctctggagtagaaaacacaagattcaacaccagttcagcttaatgatgaag |
9390855 |
T |
|
| Q |
201 |
gaagcaagacaaattttctaacc-----acatgacatgtaacaacatgcaatgaccacatacacaatcctagttataaaaaagaccagagtaagacaaa- |
294 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
9390856 |
gaagcaagacagattttctaaccatgtaatgtgacatgtaacatcatgcaatgaccacatacacaattctagttataaaaaagaccagagtgtgacaaaa |
9390955 |
T |
|
| Q |
295 |
--------------atgcagccagtacattttagctgataaatagagattgtatgaatcttattctaagtgagcttgatatttaatttaaacacattgaa |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| | | ||||||||||| |
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|
| T |
9390956 |
tgcagttcatatatatgcagccagtacattttagctgataaatagagattgtatgaatcttactctaggtaagcttgatatttagtatgaacacattgaa |
9391055 |
T |
|
| Q |
381 |
atatgaaacattcattcat |
399 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
9391056 |
atataaaacattcattcat |
9391074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 9391170 - 9391215
Alignment:
| Q |
491 |
taccacttctctttaatctgatatatttttgaaaatcagtacgagg |
536 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9391170 |
taccacttctctgtaatctgatatatttttgaaaatcagtacgagg |
9391215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 5640394 - 5640546
Alignment:
| Q |
1 |
acagtacataatatcaattaaagataaggaaccttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcat |
100 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||| | ||||| ||||||| |
|
|
| T |
5640394 |
acagaacataatatcaattcaagatcaggaaccttcttcttcggaatgaggcaaactctctcatagtcatcgttatttaacagatatggcctgtgatcat |
5640493 |
T |
|
| Q |
101 |
acagcataccacttggtgcactttgagagtcagccaaataattcaccatctct |
153 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5640494 |
acagcagaccacttggtgcactttcagagtcagctgtgtaattcaccatctct |
5640546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 5640872 - 5640918
Alignment:
| Q |
490 |
ataccacttctctttaatctgatatatttttgaaaatcagtacgagg |
536 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
5640872 |
ataccacttctctttaatctaatatatctctgaaaatcagtacgagg |
5640918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 2668 - 2623
Alignment:
| Q |
491 |
taccacttctctttaatctgatatatttttgaaaatcagtacgagg |
536 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2668 |
taccgcttctctttaatctgatatatttttgaaaataagtacgagg |
2623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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