View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_12 (Length: 663)
Name: NF4125_high_12
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 7 - 649
Target Start/End: Original strand, 34017285 - 34017929
Alignment:
| Q |
7 |
aggaggagcagagagaccgaaatcggaaaccttgagattcccatcggcgtcgaggaggagattctgcggtttaagatcacggtgagcgacgccattacgg |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
34017285 |
aggaagagcagagagaccgaaatcggaaaccttgagattcccatcggcgtcgaggaggagattttgcggtttaagatcacggtgagcgacgccgttacgg |
34017384 |
T |
|
| Q |
107 |
tggcagaaacgtaacgcagagacaagctgttgaaagtagaaacgagcggtgggttcggagaatcttccacggcgggagagagcggagaaaagctcaccac |
206 |
Q |
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| T |
34017385 |
tggcagaaacgtaacgcagagacaagctgttgaaagtagaaacgagcggtggattcggagaatcttccacggcgggagagagcggagaaaagctcaccac |
34017484 |
T |
|
| Q |
207 |
cggcggcgaattcaacaataagatggattttggtttttgtagccatgacttcatggattttgaggatgttagggtggtgttggagacggcgcatggcgtc |
306 |
Q |
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| T |
34017485 |
cggcggcgaattcaacgataagatggattttggtttttgtagccatgacttcatggattttgaggatgttagggtggtgttggagacggcgcatggcgtc |
34017584 |
T |
|
| Q |
307 |
gatttcacggataatgcgaggctccatggcggcgtcaacggtttttgacttgtcgatgattttgacggcgacggtggtggcgttgtcgaggagggaatga |
406 |
Q |
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| T |
34017585 |
gatttcacggataatgcgaggctccatggcggcgtcaacggtttttgacttgtcgatgattttgacggcgacggtggtggcgttgtcgaggagggaatga |
34017684 |
T |
|
| Q |
407 |
gctttgtagactttggcgaagctgccgcggccaaggaggcgggttagttggtattttccgagaattgtgggagggcggggggttggtggttgttgtaatg |
506 |
Q |
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| T |
34017685 |
gctttgtagactttggcgaagctgccgcggccaaggaggcgggttagttggtattttccgagaatggtgggagggcggggggttggaggatgttgtaatg |
34017784 |
T |
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| Q |
507 |
gcggttccatggcttgcttggcggtggtgatgagtagagagaagctaagtaggaactttcaaagggtagagaatatgtttatgt-gaaatgagtttatat |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||| |
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| T |
34017785 |
gcggttccatggcttgcttggcggtggtgatgagtagagagaagctaagtaggaactttcatggggtagagaatatgtttgtgtggaaatcggtttatat |
34017884 |
T |
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| Q |
606 |
agagaagg-tttggttggttgatgggagaaatatcatgtgaaatg |
649 |
Q |
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| T |
34017885 |
agagaaggttttggttggttgatgggagaaatatcatgtgaaatg |
34017929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 15171845 - 15171972
Alignment:
| Q |
17 |
gagagaccgaaatcggaaaccttgagattcccatcggcgtcgaggaggagattctgcggtttaagatcacggtgagcgacgccattacggtggcagaaac |
116 |
Q |
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| T |
15171845 |
gagagaccgaaatcggaaaccttgagattaccttcagcatcgaggaggagattctgcggtttgagatcgcggtgagcgataccgttacggtggcagaaac |
15171944 |
T |
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| Q |
117 |
gtaacgcagagacaagctgttgaaagta |
144 |
Q |
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| T |
15171945 |
aaagagcggaaacaagctgttgaaagta |
15171972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 381
Target Start/End: Original strand, 15172021 - 15172209
Alignment:
| Q |
193 |
gaaaagctcaccaccggcggcgaattcaacaataagatggattttggtttttgtagccatgacttcatggattttgaggatgttagggtggtgttggaga |
292 |
Q |
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| T |
15172021 |
gaaaagttcaccgccgccggcgaaatcaacgatgaggtagatcttagttttagtggctaaaacttcatggattttgagaatgtttggatgattttgaagc |
15172120 |
T |
|
| Q |
293 |
cggcgcatggcgtcgatttcacggataatgcgaggctccatggcggcgtcaacggtttttgacttgtcgatgattttgacggcgacggt |
381 |
Q |
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| T |
15172121 |
cgacgcatcgcgtcaatttcgcgaacgattcgtggctccattgatgcatcgacggttttggatttgtcgatgacttttacggcgacggt |
15172209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 54659626 - 54659554
Alignment:
| Q |
18 |
agagaccgaaatcggaaaccttgagattcccatcggcgtcgaggaggagattctgcggtttaagatcacggtg |
90 |
Q |
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| T |
54659626 |
agagaccaaaatcagagactttgagattaccgtcttcgtcgaggaggagattctccggcttgagatcacggtg |
54659554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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