View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_13 (Length: 661)
Name: NF4125_high_13
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 108 - 499
Target Start/End: Original strand, 11814897 - 11815288
Alignment:
| Q |
108 |
acgttggaaaatacaaatgtgtagtatgtttgtaacttttgcaagccaaatgtttattatatagatataaaatacagttatagatctttatttaggcgtt |
207 |
Q |
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| T |
11814897 |
acgttggaaaataaacttgtgtagtatctttgtaacttttgcaagccaaatgtttattatat-gatataaaatacagttatagatttttatttaggcgtt |
11814995 |
T |
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| Q |
208 |
tgtcggggtaggttcctgcccccatatttgccnnnnnnnnnnnnnncagaatccc-aaagcaaacgaaaacaatgtaaacaaaatatataattaataagg |
306 |
Q |
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| T |
11814996 |
tctcagggtagtttcctgcccccatatttgccaaaaaagaaaaaaacagaatccccaaagcaaacgaaaacaatctaaataaaatatataattaataagg |
11815095 |
T |
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| Q |
307 |
tctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagtactttaattgcaataactatccagtacttcagatct |
406 |
Q |
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| T |
11815096 |
tctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagtactttaattgcaataactatccagtacttcagatct |
11815195 |
T |
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| Q |
407 |
ttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggattcactatctcaagcctgtacaaaa |
499 |
Q |
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| T |
11815196 |
ttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattctggattcactatctcaagcctgtacaaaa |
11815288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 11826067 - 11826176
Alignment:
| Q |
405 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggattcactatctcaagcctgtacaaaatagat |
504 |
Q |
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| T |
11826067 |
ctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatctggatttactcgatcaagcctacacgaaatagat |
11826166 |
T |
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| Q |
505 |
gaattagtaa |
514 |
Q |
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| T |
11826167 |
aaattagtaa |
11826176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 11815285 - 11815347
Alignment:
| Q |
518 |
aaaaattgagcttgatttcaaactaattaattcttttctatgaaattaatttaacagcaaaagttaa |
584 |
Q |
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| T |
11815285 |
aaaaattgagcttgatttcaaactaatt----cctttctatgaaattaatttaacagcaaaaattaa |
11815347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 476
Target Start/End: Original strand, 11799285 - 11799356
Alignment:
| Q |
405 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggatt |
476 |
Q |
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| T |
11799285 |
ctttatcaccttggaaaggcaattgtctataggcttggataatggtaagcaagtaatagggcattctggatt |
11799356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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