View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_15 (Length: 628)
Name: NF4125_high_15
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 30516561 - 30517182
Alignment:
| Q |
1 |
tttgtgaaaaatcacatgcattattatgatcttcctcattgccaagactaatgagtaatgaacttgaagtaccatacataccagtaccaccaaacttgtt |
100 |
Q |
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| T |
30516561 |
tttgtgaaaaatcacatgcattattatgatcttcctcattgccaagactaatgagtaatgaacttgaagtaccatacataccagtaccaccaaacttgtt |
30516660 |
T |
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| Q |
101 |
cacatcattagtactattattattactgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaac |
200 |
Q |
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| T |
30516661 |
cacatcattagtactattattattactgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaac |
30516760 |
T |
|
| Q |
201 |
aaagctgtagctgacatgtttgctgaagatgtttgatgtgatatttggtgttgtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaa |
300 |
Q |
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| T |
30516761 |
aaagctgtagctgacatgtttgctgaagatgtttgatgtgatatttggtgttgtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaa |
30516860 |
T |
|
| Q |
301 |
catccttaacattaacattaatgtttcctagtggaagtgaagttgtagtactagtaattaattcttggctgcaattgtttgaaagtttagttccaaaaac |
400 |
Q |
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| T |
30516861 |
catccttaacattaacattaatgtttcctagtggaagtgaagttgtagtactagtaattaattcttggctgcaattgtttgaaagtttagttccaaaaac |
30516960 |
T |
|
| Q |
401 |
ccaatttagctgataattattagaatatggtggagggttctcatttccaccatacataatttctcttgaagatgagtcaatttgttgatgaatctcatgc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| |
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| T |
30516961 |
ccaatttagctgataattattagaatatggtggagggttctcatttccaccatacataatttctcttgatgatgagtcaagttgttgttgaatctcatgc |
30517060 |
T |
|
| Q |
501 |
aaactagaatttccattggtggtggttatcattgtttcatgaggttgagaatgagaagtttgattcatccaaagggatagtcctctagtttgattggttg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517061 |
aaactagaatttccattggtggtggttatcattgtttcatgaggttgagaatgagaagtttgattcatccaaagggatagtcctctagtttgattggttg |
30517160 |
T |
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| Q |
601 |
attcaagatgatgatgatgatg |
622 |
Q |
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| T |
30517161 |
attcatgatgatgatgatgatg |
30517182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 38894480 - 38894629
Alignment:
| Q |
127 |
tgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaacaaagctgtagctgacatgtttgctga |
226 |
Q |
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||||| |||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
38894480 |
tgcatctcaaacctaagcttccaaggaataatgattcagttgaagttgtcccaatttgagcagctttttgcaacaaagctgttgctgacatgtttgctga |
38894579 |
T |
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| Q |
227 |
agatgtttgatg-tgatat-----ttggtgttgtgagctgtacaaggaag |
270 |
Q |
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| T |
38894580 |
ggttgtttgatgatgagattgtgattggtgttgtgagctatacaaggaag |
38894629 |
T |
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Back To:
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