View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_17 (Length: 588)

Name: NF4125_high_17
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_17
NF4125_high_17
[»] chr2 (1 HSPs)
chr2 (19-574)||(44577120-44577660)
[»] chr4 (5 HSPs)
chr4 (452-517)||(1743672-1743737)
chr4 (451-516)||(2006644-2006709)
chr4 (247-371)||(1743834-1743953)
chr4 (440-518)||(1498332-1498410)
chr4 (247-371)||(2006429-2006548)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Original strand, 44577120 - 44577660
Alignment:
Q  19 aggtatcctt-gaccaacttgaataaagaccaccttaacatatgatggtgacttacctaacaagcaaaagactgatcaa-gatttcatgctttgaaaagg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44577120 aggtatccttagaccaacttgaataaagaccaccttaacatatgatggtgccttacctaacaagcaaaagactgatcaaagatttcatgctttgaaaagg 44577219  T
Q  117 tgctagtcaaatacaatacaagactcccatttcttcaacttctttacaataactttttctttttgttccaagcttgttttgctaggagtcttgtttctct 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||    
T  44577220 tgctagtcaaatacaatacaaggctcccatttcttcaacttctttacaataactttttcttt-------------------ctaggagtcttgtttctct 44577300  T
Q  217 ctacttgttagatcaaatatttatcgcatcaatatgttagtgaaatatttttcctgaagaatgctaggaatcagtcttcaaataccttagacaaagacat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44577301 ctacttgttagatcaaatatttatcgcatcaatatgttagtgaaatttttttcctgaagaatgctaggaatcagtcttcaaattccttagacaaagacat 44577400  T
Q  317 gatttggagtttgtttcaatatatggtctgcaagcaattcctttacattgcaaactagaatgcttagtcttc--attttctctaacaccacatactcatg 414  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  44577401 gatttggagtttgtttcaatatattgtctgcaagcaattcgtttacattacaaactagaatgcttagtcttctcattttctctaacactacatactcatg 44577500  T
Q  415 aggtttttaaggctcaaactcatagatagacctcatccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44577501 aggtttttaaggctcaaactcatagatagacctcatccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgat 44577600  T
Q  515 ttggaatgaagtttcatgtcgcactctgatcctaggagcccattatattgatcactatcc 574  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44577601 ttggaataaagtttcatgtcgcactctgatcctaggagcccattatattgatcactatcc 44577660  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 452 - 517
Target Start/End: Complemental strand, 1743737 - 1743672
Alignment:
Q  452 cacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgatttg 517  Q
    |||||||||||||||||||||  | | |||||||||||||||||| ||||||||||||||||||||    
T  1743737 cacttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggttggaccttgatttg 1743672  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 2006644 - 2006709
Alignment:
Q  451 ccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgattt 516  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||| ||||| |||||||||||||    
T  2006644 ccacttcaatggtgaacttgaaggcttgcttcatcaagtttcacaatctgggctggaccttgattt 2006709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 371
Target Start/End: Complemental strand, 1743953 - 1743834
Alignment:
Q  247 aatatgttagtgaaatatttttcctgaagaatgctaggaatcagtcttcaaataccttagacaaagacatgatttggagtttgtttcaatatatggtctg 346  Q
    ||||||||| ||||| ||||| ||| ||||||| | ||||||| ||||||||| |||| | ||| || | |||||||||| ||||||    |||||||||    
T  1743953 aatatgttattgaaagatttt-cctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggagtctgtttc----tatggtctg 1743859  T
Q  347 caagcaattcctttacattgcaaac 371  Q
    |||| ||||||||| |||| |||||    
T  1743858 caagaaattcctttccattacaaac 1743834  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 518
Target Start/End: Original strand, 1498332 - 1498410
Alignment:
Q  440 atagacctcatccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgatttgg 518  Q
    |||||||| | |||||||| ||| ||||||||| |||||||||||||||||| | || || | ||||||||| ||||||    
T  1498332 atagaccttagccacttcattggagaactagaaagcttgcttcatcaaattttataatctagattggaccttaatttgg 1498410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 371
Target Start/End: Original strand, 2006429 - 2006548
Alignment:
Q  247 aatatgttagtgaaatatttttcctgaagaatgctaggaatcagtcttcaaataccttagacaaagacatgatttggagtttgtttcaatatatggtctg 346  Q
    ||||| ||||||||| ||||| ||| ||||||| | ||||||| |||| | || |||| | ||| || |||||||||||| ||||||    |||||||||    
T  2006429 aatatattagtgaaagatttt-cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttc----tatggtctg 2006523  T
Q  347 caagcaattcctttacattgcaaac 371  Q
    |||| ||||||||| |||| |||||    
T  2006524 caagaaattcctttccattacaaac 2006548  T

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