View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_18 (Length: 587)
Name: NF4125_high_18
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 4759440 - 4758867
Alignment:
| Q |
1 |
atgttaatgtaaattatattataattccatggcctaaaccctatgacttgaactttatttaaatataatataattgacaagaatattaactaagagacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4759440 |
atgttaatgtaaattatattataattccatggcctaaaccctatgacttgaactttatttaaatataatataattgacaagaatattaactaagagacta |
4759341 |
T |
|
| Q |
101 |
agtaatcccatgatttatgttacttttataattcttgcaaggcaattatctttaggccttggcactggcaggtaggtaactggacaatctggattaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4759340 |
agtaatcccatgatttatgttacttttataattcttgcaaggcaattatctttaggccttggcactggcaggtaggtaactggacaatctggattaattc |
4759241 |
T |
|
| Q |
201 |
tctccatcctgcaagacaaaaacaatcatagacaaaattgattatttatttaatttcttagcatatgaatacattattttattcctttgcatgcatgaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4759240 |
tctccatcctgcaagacaaaaacaatcatagacaaaattgattatttatttaatttcttagcatatgaatacattattttattcctttgcatgcatcaat |
4759141 |
T |
|
| Q |
301 |
aagtcaatggttgcaaaatggaagcaagtgtgtatta----acctgtagttaagaagaaaatgatgaaggtaaatagtgatctcaagtttagctagatcg |
396 |
Q |
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| T |
4759140 |
aagtcaatggttgcaaaatggaagcaagtgtgtattaacctacctgtagttaagaagaaaatgatgaaggtaaatagtgatctcaagtttagctagatca |
4759041 |
T |
|
| Q |
397 |
cttcctggacataatctgcttcctaatccaaatggattgaatgatcctgcttttgctttgtaattctacaccacattttttaagcacacataacataagt |
496 |
Q |
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| T |
4759040 |
cttcctggacataatctgcttcctaatccaaatggattgaatgatcctgcttttgctttgtaattctacaccacattttttaagtacacataacataagt |
4758941 |
T |
|
| Q |
497 |
tacata---nnnnnnnnngaaagataacatgttacatattttgttcatcaaatttaattcaccaatgcattaag |
567 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4758940 |
tacatattttttttttttgaaagataacatgttacatattttgttcatcaaatttaattcaccaatgcattaag |
4758867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 311 - 494
Target Start/End: Complemental strand, 4741524 - 4741341
Alignment:
| Q |
311 |
ttgcaaaatggaagcaagtgtgtattaacctgtagttaagaagaaaatgatgaaggtaaatagtgatctcaagtttagctagatcgcttcctggacataa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| | |
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| T |
4741524 |
ttgcaaaatggaagcaagtgtgtattaacctgtagttaagaagaaaatgatgaaggtaaatagtgatctcaagtttagccaaatcacttcctggacaata |
4741425 |
T |
|
| Q |
411 |
tctgcttcctaatccaaatggattgaatgatcctgcttttgctttgtaattctacaccacattttttaagcacacataacataa |
494 |
Q |
| |
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|| ||||| ||||||||||| ||| |||| || |||||||| |||||| || ||||||||| ||| ||||||||||||| |
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| T |
4741424 |
cctacttccatatccaaatggaagaaattgtcctactcttgctttgaaattctgcatcacatttttaaagtacacataacataa |
4741341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 311 - 494
Target Start/End: Complemental strand, 4750789 - 4750606
Alignment:
| Q |
311 |
ttgcaaaatggaagcaagtgtgtattaacctgtagttaagaagaaaatgatgaaggtaaatagtgatctcaagtttagctagatcgcttcctggacataa |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| | |
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| T |
4750789 |
ttgcaaaatggaagcaagtgtgtattaacctgtagttaagaagaaaatgatgaaggtaaatagtgatctcaagtttagccaaatcacttcctggacaata |
4750690 |
T |
|
| Q |
411 |
tctgcttcctaatccaaatggattgaatgatcctgcttttgctttgtaattctacaccacattttttaagcacacataacataa |
494 |
Q |
| |
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|| ||||| ||||||||||| ||| |||| || |||||||| |||||| || ||||||||| ||| ||||||||||||| |
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| T |
4750689 |
cctacttccatatccaaatggaagaaattgtcctactcttgctttgaaattctgcatcacatttttaaagtacacataacataa |
4750606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 4750969 - 4750839
Alignment:
| Q |
104 |
aatcccatgatttatgttacttttataattcttgcaaggcaattatctttaggccttggcactggcaggtaggtaactggacaatctggattaattctct |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
4750969 |
aatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttgcaattggcaggtaggtaattggacaatctggattaattctct |
4750870 |
T |
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| Q |
204 |
ccatcctgcaagacaaaaacaatcatagaca |
234 |
Q |
| |
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|||||||||| |||||||||||| ||||| |
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| T |
4750869 |
ccatcctgcacaccaaaaacaatcagagaca |
4750839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 4741705 - 4741574
Alignment:
| Q |
104 |
aatcccatgatttatgttacttttataattcttgcaaggcaa-ttatctttaggccttggcactggcaggtaggtaactggacaatctggattaattctc |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
4741705 |
aatcccatgatttatgttacttttataattcttgcaagacaaattatctgtaggccttgcaattggcaggtaggtaattggacaatctggattaattctc |
4741606 |
T |
|
| Q |
203 |
tccatcctgcaagacaaaaacaatcatagaca |
234 |
Q |
| |
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||||||||||| |||||||||||| ||||| |
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| T |
4741605 |
tccatcctgcacaccaaaaacaatcagagaca |
4741574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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