View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_19 (Length: 543)
Name: NF4125_high_19
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 19399076 - 19399556
Alignment:
| Q |
18 |
attcatgtttagatgttattgaagttgtccaagatatgggttattgtcaactgcacgagggatccggtaaaaaactacaggtaaactttactttgagaga |
117 |
Q |
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| T |
19399076 |
attcatgtttagatgttattggagttgtccaagatatgagttattgtcaactgcacgagggaatcggtaaaaaactgcaggtcaactttactttgagaga |
19399175 |
T |
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| Q |
118 |
cttgagtgttattactcttaactgtactctatgggagagactatgctatgaagtttattcatgataatgagaggaaagaatatgaaccagtaattgttat |
217 |
Q |
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| T |
19399176 |
cttgagtgttattacttttaactgcactccatgagag-gactatgctaggaagtttattcacgataataagagaaaagaatatggaccggtcattgttat |
19399274 |
T |
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| Q |
218 |
actgaagtatgccaaagttaaagaagaatgttcgttatatttaatacgtttgcgtccatatagtcattggtcttatgtttgcttaagtataatattgttt |
317 |
Q |
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| T |
19399275 |
gttgaagtatgccaaagttaaagaagaatgttcgttatgtttaatacgtttgcgtccatatagtcattggacttatgtttgcttaagtataatattgttt |
19399374 |
T |
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| Q |
318 |
attttggatctctttgatattgtaggtcatttctctttgcttaagttactctgtcacaaagtagttgtttattaatgatgacatttagggtatcaaccag |
417 |
Q |
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| T |
19399375 |
attttggatctctttgatattgtaggtcgtttctccttgcttaagttactctgtcacaa---agttgtttattgatgatgacattcagggtatcaaacag |
19399471 |
T |
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| Q |
418 |
ttcggggaaaggtatattttacttatgtttagaggtaactaccatatattcttatgtatttttatgttgttgtagtttaactcat |
502 |
Q |
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| T |
19399472 |
ttcggggaaagatatgttttactcatgtttagaggtaactaccatatattctaatgtatttttatgttgttgtagtttaactcat |
19399556 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 20220358 - 20220290
Alignment:
| Q |
86 |
aaaaaactacaggtaaactttactttgagagacttgagtgttattactcttaactgtactctatgggag |
154 |
Q |
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|||||||| || || ||||||||||||||||||||||||| | | |||||||| || ||| |||||||| |
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| T |
20220358 |
aaaaaacttcaagtcaactttactttgagagacttgagtgatgtcactcttaattgcactttatgggag |
20220290 |
T |
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