View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_20 (Length: 530)
Name: NF4125_high_20
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 40407035 - 40406814
Alignment:
| Q |
154 |
attcacccaactccaatttcagaaacaaacagattccaacattcacttcccaaa-tcacacaatgtcgaaaccctgcatccccatcctcctcctcttcac |
252 |
Q |
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| T |
40407035 |
attcacccaactccaatttcagaaacaaacagattccaacattcacttcccaaaatcacacaatgtcgaaaccctacatccccatcctcctcctcttcac |
40406936 |
T |
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| Q |
253 |
caccttcctccacttcctcttccccaccaccgccgaaatcaaatccctcaccatcacttccgacactcgccccatgatcctcttcgaaaaattcggtttc |
352 |
Q |
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| T |
40406935 |
caccttcctccacttcctctcccccaccaccgccgaaatcaaatccctcaccatcacttccgacactcgccccatgatcctcttcgaaaaattcggtttc |
40406836 |
T |
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| Q |
353 |
actcccaaaggccacgtcacca |
374 |
Q |
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|||||||||||||||||||||| |
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| T |
40406835 |
actcccaaaggccacgtcacca |
40406814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 40407190 - 40407088
Alignment:
| Q |
9 |
ggaaagaaatgctagtatgcaaataaatttaattaatgacaataacgtaggtggcacgtcgtgttactggggtggtgcggtgacaacgtcgcgttcagat |
108 |
Q |
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| T |
40407190 |
ggaaagaaatgctagtgtgcaaataaatttaattaatgccaataacgtaggtggcacgtcgtgttactggtgtggtgcggtgacaacatcgcgttcagat |
40407091 |
T |
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| Q |
109 |
ccg |
111 |
Q |
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||| |
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| T |
40407090 |
ccg |
40407088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 40406721 - 40406666
Alignment:
| Q |
461 |
aacgaagaaaccctcatccaagtcctcatcgagatccaacaaaacccttccttctg |
516 |
Q |
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| T |
40406721 |
aacgaagaaaccctcatccaagtcctcatcgagatccaacaaaacccttccttctg |
40406666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 29027581 - 29027523
Alignment:
| Q |
290 |
atcaaatccctcaccatcacttccgacactcgccccatgatcctcttcgaaaaattcgg |
348 |
Q |
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| T |
29027581 |
atcaaatccctcacaataacctccgacacccgacccatgatcctcttagagaaattcgg |
29027523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 508
Target Start/End: Complemental strand, 29027404 - 29027375
Alignment:
| Q |
479 |
caagtcctcatcgagatccaacaaaaccct |
508 |
Q |
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| T |
29027404 |
caagtcctcatcgagatccaacaaaaccct |
29027375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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