View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_21 (Length: 523)
Name: NF4125_high_21
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_21 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold1033 (2 HSPs) |
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| [»] scaffold1029 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 291 - 523
Target Start/End: Complemental strand, 28569249 - 28569017
Alignment:
| Q |
291 |
aaatgaaccaacgtggcttcttgacctttactacttgcacgatcgactaaacatattatattacatttggacgttcaatatatataagcaataattaatt |
390 |
Q |
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| T |
28569249 |
aaatgaaccaacgtggcttcttgacctttactacttgcacgatcgactaaacatattatattacatttggacgttcaatatatataagcaata---aatt |
28569153 |
T |
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| Q |
391 |
aaggttgatctaaagttcctcacataataaacatggaatataagaaacatgttcttcctttaaattaatcgttgttat----ttaatgttaaatagtcat |
486 |
Q |
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| T |
28569152 |
aagattgatctaaagttcctcacaaaataaacatggaatataagaaacatgttc-tcctttaaattaatcgttgttatttaattaatgttaaatagtcat |
28569054 |
T |
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| Q |
487 |
gaatagacaacagcacatcatcaacatactataacaa |
523 |
Q |
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| T |
28569053 |
gaatagacaacagcacatcagcaacatactataacaa |
28569017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 28569501 - 28569266
Alignment:
| Q |
12 |
tattctcgaaattaaaaatatgtcattcttgaaaccaacaccaaataagtttttaatatgtcattcttgattcaacatattactactattttataagnnn |
111 |
Q |
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| T |
28569501 |
tattctcgaaattaaaaatatgtcattcttgaaaccaacaccaaataagtttttaatatgtcattcttgattcaacatattactactattttataagaaa |
28569402 |
T |
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| Q |
112 |
nnnnnnnnnncaaacgaagtttggtaaagcacaagcgcttagcctctcacagcatgacgggataaaattcaaatttggattgtaagaagtgttcatattt |
211 |
Q |
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| T |
28569401 |
aagaaaaaaacaaaggaagtttggtaaagcacaagcgcttagcctctcacagcatgacgggataaaattcaaatttgaattgtaagaagtgtccatattt |
28569302 |
T |
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| Q |
212 |
agtatcgtgtcccaagctgcatacaatcacgtgttt |
247 |
Q |
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| T |
28569301 |
agtatcgtgtcccaagctgcatacaatcacgtgttt |
28569266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 28580819 - 28580750
Alignment:
| Q |
427 |
aatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaatagtcatgaatagacaaca |
498 |
Q |
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| T |
28580819 |
aatataagaaacatgttc-tcctttaaattaattattgttatttagag-tagaaagtcatgaatagacaaca |
28580750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 26317111 - 26317014
Alignment:
| Q |
272 |
atgtagaaatttatcatgcaaatgaaccaacgtggcttcttgacctttactacttgcacgatcgactaaacatattatattacatttggacgttcaata |
370 |
Q |
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| T |
26317111 |
atgtagaaatttatcaagaaaatcaaacaaagtggcttatgtacctttacaatttgctcgatctactaaacata-tataatatatttggatgttcaata |
26317014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 380 - 521
Target Start/End: Original strand, 2672 - 2800
Alignment:
| Q |
380 |
aataattaattaaggttgatctaaagttcctcacataataaacatggaatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaa |
479 |
Q |
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| T |
2672 |
aataattaattaagatcgatctaaagttcctcacgaaataaaca---------agaaacatgttctt----taaattaatcgttgttatttaatgttaaa |
2758 |
T |
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| Q |
480 |
tagtcatgaatagacaacagcacatcatcaacatactataac |
521 |
Q |
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| T |
2759 |
tagtcatgaatagaaaacagcacatcaacaacatactataac |
2800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 2381 - 2417
Alignment:
| Q |
69 |
atgtcattcttgattcaacatattactactattttat |
105 |
Q |
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| T |
2381 |
atgtcattcttgattccacgtattactactattttat |
2417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 380 - 521
Target Start/End: Original strand, 2672 - 2800
Alignment:
| Q |
380 |
aataattaattaaggttgatctaaagttcctcacataataaacatggaatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaa |
479 |
Q |
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|||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2672 |
aataattaattaagatcgatctaaagttcctcacgaaataaaca---------agaaacatgttctt----taaattaatcgttgttatttaatgttaaa |
2758 |
T |
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| Q |
480 |
tagtcatgaatagacaacagcacatcatcaacatactataac |
521 |
Q |
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| T |
2759 |
tagtcatgaatagaaaacagcacatcaacaacatactataac |
2800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 2381 - 2417
Alignment:
| Q |
69 |
atgtcattcttgattcaacatattactactattttat |
105 |
Q |
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| T |
2381 |
atgtcattcttgattccacgtattactactattttat |
2417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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