View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_22 (Length: 517)

Name: NF4125_high_22
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_22
NF4125_high_22
[»] chr8 (1 HSPs)
chr8 (10-500)||(11402333-11402823)
[»] chr5 (4 HSPs)
chr5 (162-342)||(12643834-12644017)
chr5 (362-495)||(12528771-12528905)
chr5 (362-495)||(35842117-35842251)
chr5 (360-472)||(12643849-12643962)
[»] chr6 (1 HSPs)
chr6 (362-495)||(29304137-29304271)
[»] chr4 (3 HSPs)
chr4 (362-495)||(27729984-27730118)
chr4 (362-495)||(45966404-45966538)
chr4 (159-349)||(45966409-45966603)
[»] chr2 (3 HSPs)
chr2 (362-495)||(42912884-42913018)
chr2 (159-349)||(42912819-42913013)
chr2 (243-349)||(42301083-42301189)
[»] chr1 (2 HSPs)
chr1 (362-495)||(29282025-29282159)
chr1 (159-349)||(29281960-29282154)


Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 10 - 500
Target Start/End: Original strand, 11402333 - 11402823
Alignment:
Q  10 aagcaaaggaggaagccttgaaaagtcaagtgaacttcaataatattaatgaatccaatcaaatgggagaggacatggaaacttcgatcaaaagagagaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11402333 aagcaaaggaggaagccttgaaaagtcaagtgaacttcaataacattaatgaatccaatcaaatgggagaggacatgaaaacttcgatcaaaagagagaa 11402432  T
Q  110 caatttcaatccaaaaggtggaaacaattttggttctatcaactatatatggcaaaggaagaagttattacaaccaagagaggagaaattatgttttcac 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402433 caatttcaatccaaaaggtggaaacaattttggttctatcaattatatatggcaaaggaagaagttattacaaccaagagaggagaaattatgttttcac 11402532  T
Q  210 cgcgaaaagtttgagcgcaaagcagacgattgaagatataaacatcatgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  11402533 cgcgaaaagtttgagcgcaaagcagacgattgaagatataaacatcatgcacagattgcaaaaaatttatatcaaaacaattgtgagtcttatgaaaatc 11402632  T
Q  310 catatggtttaattttagcaagcaatacactttcacaagactcatcagtgttttgatatgaattttctgccacgtttgcctgatgttgtatttgcaatcg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402633 catatggtttaattttagcaagcaatacactttcacaagactcattagtgttttgatatgaattttctgccacgtttgcctgatgttgtatttgcaatcg 11402732  T
Q  410 gctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctctcttgtttgtaagaacctctttctctgccacggttggtag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402733 gctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctctcttgtttgtaagaacctctttctctgccacggttggtag 11402823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 342
Target Start/End: Original strand, 12643834 - 12644017
Alignment:
Q  162 caaaggaagaagttattacaaccaagagaggagaaattat----gttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacatcat 257  Q
    |||||||| | | ||||||||||||||||| | |||||||    |||| |||   |||||||||| || |||| |||  ||||| ||||| |||||||      
T  12643834 caaaggaaaaggatattacaaccaagagagaacaaattatagttgtttccactatgaaaagtttgggcacaaaacagctgattgcagatacaaacatcga 12643933  T
Q  258 gcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacacttt 342  Q
    | | | ||  ||||||||| | ||||||| | | ||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  12643934 gaaaacatgccagaaaattcatatcaaaa-actagtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttt 12644017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Original strand, 12528771 - 12528905
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  12528771 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 12528870  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  12528871 tcttggttgtaataacctcttcctctgccacggtt 12528905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Complemental strand, 35842251 - 35842117
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  35842251 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 35842152  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  35842151 tcttggttgtaacaacctcttcctctgccacggtt 35842117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 472
Target Start/End: Complemental strand, 12643962 - 12643849
Alignment:
Q  360 ttttgatatgaattttctgccacgtttgcctgatg-ttgtatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtc 458  Q
    ||||||||||||||||||| || |||| |  |||| |||||| ||||||| |||| |||||||| ||| |||  |  ||| |||||||| ||||||| ||    
T  12643962 ttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaacttttcatagtggaaacaactataatttgttc 12643863  T
Q  459 tctcttgtttgtaa 472  Q
    ||||||| ||||||    
T  12643862 tctcttggttgtaa 12643849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Complemental strand, 29304271 - 29304137
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  29304271 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 29304172  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  29304171 tcttggttgtaataacctcttcctctgccacggtt 29304137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Original strand, 27729984 - 27730118
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  27729984 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 27730083  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  27730084 tcttggttgtaataacctcttcctctgccacggtt 27730118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Complemental strand, 45966538 - 45966404
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  45966538 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 45966439  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  45966438 tcttggttgtaataacctcttcctctgccacggtt 45966404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 349
Target Start/End: Original strand, 45966409 - 45966603
Alignment:
Q  159 tggcaaaggaagaagttattacaaccaagagaggagaaattatg----ttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacat 254  Q
    ||||| ||||||| ||||||||||||||||||| | |||| |||    |||| |  | | ||||| || || ||||||||  || || ||||||||||||    
T  45966409 tggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacat 45966508  T
Q  255 catgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacactttcacaaga 349  Q
    || ||| | || ||||| |||| | ||||| |   | ||||||||| | |||||| | || ||||| ||||||||||||||||||||||| ||||    
T  45966509 caagcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaaga 45966603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Original strand, 42912884 - 42913018
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  42912884 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 42912983  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  42912984 tcttggttgtaataacctcttcctctgccacggtt 42913018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 349
Target Start/End: Complemental strand, 42913013 - 42912819
Alignment:
Q  159 tggcaaaggaagaagttattacaaccaagagaggagaaattatg----ttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacat 254  Q
    ||||| ||||||| ||||||||||||||||||| | |||| |||    |||| |  | | ||||| || || ||||||||  || || ||||||||||||    
T  42913013 tggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacat 42912914  T
Q  255 catgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacactttcacaaga 349  Q
    || ||| | || ||||| |||| | ||||| |   | ||||||||| | |||||| | || ||||| ||||||||||||||||||||||| ||||    
T  42912913 caagcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaaga 42912819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 42301083 - 42301189
Alignment:
Q  243 agatataaacatcatgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacacttt 342  Q
    |||||||||||||| ||| | || ||||| |||| | ||||| |   | ||||||||| | |||||| | || ||||| |||||||||||||||||||||    
T  42301083 agatataaacatcaggcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacacttt 42301182  T
Q  343 cacaaga 349  Q
    || ||||    
T  42301183 cagaaga 42301189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 495
Target Start/End: Original strand, 29282025 - 29282159
Alignment:
Q  362 ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc 460  Q
    |||||||||||| |||||||  ||||| |||||||  ||| |||| || ||||||||||||| | | |||| ||  | ||||||||  | ||||| ||||    
T  29282025 ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc 29282124  T
Q  461 tcttgtttgtaagaacctctttctctgccacggtt 495  Q
    ||||| |||||| |||||||| |||||||||||||    
T  29282125 tcttggttgtaataacctcttcctctgccacggtt 29282159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 349
Target Start/End: Complemental strand, 29282154 - 29281960
Alignment:
Q  159 tggcaaaggaagaagttattacaaccaagagaggagaaattatg----ttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacat 254  Q
    ||||| ||||||| ||||||||||||||||||| | |||| |||    |||| |  | | ||||| || || ||||||||  || || ||||||||||||    
T  29282154 tggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacat 29282055  T
Q  255 catgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacactttcacaaga 349  Q
    || ||| | || ||||| |||| | ||||| |   | ||||||||| | |||||| | || ||||| ||||||||||||||||||||||| ||||    
T  29282054 caagcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaaga 29281960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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