View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_25 (Length: 497)
Name: NF4125_high_25
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 47717479 - 47717010
Alignment:
| Q |
16 |
attcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttgtggttgttgttgcttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717479 |
attcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttgtggttgttgttgcttcc |
47717380 |
T |
|
| Q |
116 |
ctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgaccttttctaaatttgttagactgtctaagtcgtg |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47717379 |
ctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgacctttcctaaatttgttagactgtctaagtcgtg |
47717280 |
T |
|
| Q |
216 |
gtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacaaagttttgcattcaaatagagaaaacctagaag |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
47717279 |
gtatggatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagacaacctagaag |
47717180 |
T |
|
| Q |
316 |
cagtaattccaaaagaaacagatggcaaagaaaaatggaagccaattgttataagtattttgattttaaaaattagatattagcatatttttctaacatg |
415 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717179 |
cagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaacatg |
47717080 |
T |
|
| Q |
416 |
ccttgtacattgtttgaagatatagaagatgataatgatgatattgaaatcgctgagtcattgctattca |
485 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47717079 |
ccttgtacattgtttgaagatatagaagatgataataatgatattgaaatcgctgagtcattgctattca |
47717010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 47745269 - 47744803
Alignment:
| Q |
16 |
attcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttgtggttgttgttgcttc- |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||| |||| | |
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| T |
47745269 |
attcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatacta---tcgccacagttgtgccgactgttgttgttgttgctgctgct |
47745173 |
T |
|
| Q |
115 |
--cctgctaattttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgaccttttctaaatttgttagactgtctaagtc |
212 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || |||||||| |||| ||||||||||| |
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| T |
47745172 |
ggcctgctaattttcatttgcatatgcttaaggaaaaggaaggcaaagataaatctccaaggtacgtgactttgtctaaattcgtta--ctgtctaagtc |
47745075 |
T |
|
| Q |
213 |
gtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacaaagttttgcattcaaatagagaaaacctag |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47745074 |
gtggtatgaatgcaggataattttgacgacataaaatctacttcataataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctag |
47744975 |
T |
|
| Q |
313 |
aagcagtaattccaaaagaaacagatggcaaagaaaaatggaagccaattgttataagtattttgattttaaaaattagatattagcatatttttctaac |
412 |
Q |
| |
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| |||||||||| |||| | ||||| |||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
47744974 |
atgcagtaattcaaaaatagacagaaggcaaagaaaaatggaagcc--tttgtacaa--tgtttgattttaaaaattagatattagcatattttcctaac |
47744879 |
T |
|
| Q |
413 |
atgccttgtacattgtttgaagatat---agaagatgataatgatgatattgaaatcgctgagtcattgctattca |
485 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||| ||| |||||||||||||| ||| |||||||||||||| |
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| T |
47744878 |
atgccttgtacaatgtttgaagatataaaagaagatgaaaataatgatattgaaatcactgcgtcattgctattca |
47744803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 25 - 329
Target Start/End: Complemental strand, 47759586 - 47759276
Alignment:
| Q |
25 |
ctttgaaatgtatcattttacagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttgtggttgttgttgcttccctgctaatt |
124 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
47759586 |
ctttgaaatgtctcattttgcagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttgttgttgttgttgccgccctgctaatt |
47759487 |
T |
|
| Q |
125 |
ttcatttgcatatgcgtaaggaaaaggaaggcaaagataaatctcgaaggtatgtgaccttttctaaatttgttagactgtctaagtcgtggtatgaatg |
224 |
Q |
| |
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|| |||||||||||| |||||||||||||||||| |||||||||||||||| |||||| || |||||||| |||||||||||| |||||||||||| |
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| T |
47759486 |
tttatttgcatatgcttaaggaaaaggaaggcaaggataaatctcgaaggtgtgtgactttgtctaaattcagtagactgtctaaatcgtggtatgaact |
47759387 |
T |
|
| Q |
225 |
caggataatt-------ttgacgacataaaatttacttcataataataagttgtgatggttaacaaagttttgcattcaaatagagaaaacctagaagca |
317 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| | |||| ||||| | | |
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|
| T |
47759386 |
caggataattttgagttttgacgatttaaaatctacttcataatattaagttgtaatggttaacaaagttttgcattcaaata-aaaaaaactagatgta |
47759288 |
T |
|
| Q |
318 |
gtaattccaaaa |
329 |
Q |
| |
|
||||||| |||| |
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|
| T |
47759287 |
gtaattcaaaaa |
47759276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 47712697 - 47712559
Alignment:
| Q |
16 |
attcttaatctttgaaatgtatcattttacagaaaaaagcaaatcatcacatactaccatcgccatagttgtgccgactgttgtggttgttgttgcttcc |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||| || |
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| T |
47712697 |
attcttaatctttgaaatgtctcattttgcagaaaaaagcaaatcatcacatactaccgtcgccatagttgtgccaactgct---gttgttgttgctgcc |
47712601 |
T |
|
| Q |
116 |
ctgctaattttcatttgcatatgcgtaaggaaaaggaaggca |
157 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47712600 |
ctgctaattttcatttgcatatgcttaaggaaaaggaaggca |
47712559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 233 - 485
Target Start/End: Complemental strand, 47712524 - 47712255
Alignment:
| Q |
233 |
ttttgacgacataaaatttacttcata--ataataagttgtgatggttaacaaagttttgcattcaaatagagaaaacctagaagcagtaattccaaaag |
330 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||| |
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|
| T |
47712524 |
ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaat |
47712428 |
T |
|
| Q |
331 |
a-aacagatggcaaagaaaaatggaagccaattgttataagtattttgattttaaaaattagatattagcatattttt--------------ctaacatg |
415 |
Q |
| |
|
| || | | || ||||||||||||| |||||| || |||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47712427 |
agaaaaaaagggaaagaaaaatggacgccaatagtcataagtttttttattttaaaaattagatattagcatatttttctatttttactttactaacatg |
47712328 |
T |
|
| Q |
416 |
ccttgtacattgtttgaagatatagaag---atgataatgatgatattgaaatcgctgagtcattgctattca |
485 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47712327 |
ccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattca |
47712255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 47714004 - 47713896
Alignment:
| Q |
215 |
ggtatgaatgcagg--ataattttgacgacataaaatttacttcataataataagt--tgtgatggttaacaaagttttgcattcaaatagagaaaacct |
310 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||| |||||||| | ||||||| |
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|
| T |
47714004 |
ggtatgaatgcaggctatagttttgacgacataaaat---cttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacct |
47713908 |
T |
|
| Q |
311 |
agaagcagtaat |
322 |
Q |
| |
|
||| |||||||| |
|
|
| T |
47713907 |
agatgcagtaat |
47713896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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