View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_high_26 (Length: 493)
Name: NF4125_high_26
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 26217639 - 26217198
Alignment:
| Q |
1 |
taaaaactttgacctcacttgtcactgttgctggtttgttctctttagcatgaaaggccacaaccttgtaagttttcgttgaatcatcataaccaaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217639 |
taaaaactttgacctcacttgtcactggagctggtttgttctctttagcatgaaaggccacaaccttgtaagttttcgttgaatcatcataaccaaatcc |
26217540 |
T |
|
| Q |
101 |
aaactgaaaagagtttgacaaagtgtggaaaggacgaagacgatacagaggagtgctataactaaaggaccctaatttttcagatttttgtccggtggaa |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
26217539 |
aaactgaaaagtgtttgacaaagtgtggaaaggacgaagacgctctagaggagtgctataactaaacgaccctaatttttcagatttttttccggtggaa |
26217440 |
T |
|
| Q |
201 |
gggttccagaaatagatggagtagttctcatgcccaacatgtcgagatccaacatattctgtgatatagaaatatttggaaaacaagcagatcaatccgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217439 |
gggttccagaaatagatggagtagttctcatgcccaacatgtcgagatccaacattttctgtgatatagaaatatttggaaaacaagcagatcaatccgt |
26217340 |
T |
|
| Q |
301 |
tgcaagaaccagcgatatagcaacccctttccaaataatggctattgttgtggctgtgaatgctgatggatggatttccgattaaacgatgcaaggggat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217339 |
tgcaagaaccagcgatatagcaacccctttccaaataatggctattgttgtggctgtgaatgctgatggatggatttccgattaaacgatgcaaggggat |
26217240 |
T |
|
| Q |
401 |
gcgtgagacattgtaaccatcgtcatgattccatattactat |
442 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||| |
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|
| T |
26217239 |
gcgtgagacattataaccatcgttatcattccatattactat |
26217198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 26229889 - 26229448
Alignment:
| Q |
1 |
taaaaactttgacctcacttgtcactgttgctggtttgttctctttagcatgaaaggccacaaccttgtaagttttcgttgaatcatcataaccaaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26229889 |
taaaaactttgacctcacttgtcaccggagctggtttgttctctttagcatgaaaggccacaaccttgtaagttttcattgaatcatcataaccaaatcc |
26229790 |
T |
|
| Q |
101 |
aaactgaaaagagtttgacaaagtgtggaaaggacgaagacgatacagaggagtgctataactaaaggaccctaatttttcagatttttgtccggtggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
26229789 |
aaactgaaaagagtttgacaaagtgtggaaaggacgaagacggtctagaggagtgctataactaaacgaccctaatttttcagatttttttccggtggaa |
26229690 |
T |
|
| Q |
201 |
gggttccagaaatagatggagtagttctcatgcccaacatgtcgagatccaacatattctgtgatatagaaatatttggaaaacaagcagatcaatccgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26229689 |
gggttccagaaatagatggagtagttctcatgcccaacatgtcgagatccaacattttctgtgatatagaaatatttggaaaacaagcagatcaatccgt |
26229590 |
T |
|
| Q |
301 |
tgcaagaaccagcgatatagcaacccctttccaaataatggctattgttgtggctgtgaatgctgatggatggatttccgattaaacgatgcaaggggat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26229589 |
tgcaagaaccagcgatatagcaacccctttccaaataatggctattgttgtggctgtgaatgccgatggatggatttccgattaaacgatgcaaggggat |
26229490 |
T |
|
| Q |
401 |
gcgtgagacattgtaaccatcgtcatgattccatattactat |
442 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
26229489 |
gcgtgagacattataaccatcgttatcattccatattactat |
26229448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 26237286 - 26236890
Alignment:
| Q |
1 |
taaaaactttgacctcacttgtcactgttgctggtttgttctctttagcatgaaaggccacaaccttgtaagttttcgttgaatcatcataaccaaatcc |
100 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| |||||||| | | |||||||||| |||||||| ||||||||| ||||||||||||||||||| | |
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|
| T |
26237286 |
taaaaactttgacctcacttttacctgaagctgggttgttctcatcaacatgaaaggcaacaaccttataagttttcattgaatcatcataaccaaaagc |
26237187 |
T |
|
| Q |
101 |
aaactgaaaagagtttgacaaagtgtggaaaggacgaagacgatacagaggagtgctataactaaaggaccctaatttttcagatttttgtccggtggaa |
200 |
Q |
| |
|
||||| |||||| ||| | ||| ||| | |||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| | ||| | |||| |
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|
| T |
26237186 |
aaactcaaaagaatttaa-aaattgttcataggacgtagacgatctagaggagtgctataacaaaacgaccctaatttttcagatttctttccagcggaa |
26237088 |
T |
|
| Q |
201 |
gggttccagaaatagatggagtagttctcatgcccaacatgtcgagatccaacatattctgtgatatagaaatatttggaaaacaagcagatcaatccgt |
300 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| || ||| | ||| ||||||||| | || |||||||||| |||||||||||| |
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|
| T |
26237087 |
gggttccagaaatacatggagtagtcctcatg-----------ga----aaaccttttccgtgatatagtaggatgtggaaaacaaacagatcaatccgc |
26237003 |
T |
|
| Q |
301 |
tgc-aagaaccagcgatatagcaacccctttccaaataatggctattgttgtggctgtgaatgctgatggatggatttccgattaaacgatgcaagggga |
399 |
Q |
| |
|
||| |||||||| ||| | ||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |
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|
| T |
26237002 |
tgcaaagaaccaagaataccgaaaccctttttcaaataatggttattgttgtggctgtgaatgctgatagatggattttccattaaacgatgcaagggga |
26236903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 26256195 - 26256050
Alignment:
| Q |
274 |
atttggaaaacaagcagatcaatccgttgcaagaaccagcgatatagcaacccctttccaaataatggctattgttgtggctgtgaatgctgatggatgg |
373 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||||| ||||||||||| |||||| | ||||| ||||||||| | ||| ||| ||||||| || |
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|
| T |
26256195 |
atttgtaaaacaagaagatcaatccgttgcaggaaccagctatatagcaaccgttttccagagaatggatattgttgtcgttgtaaatagtgatggacgg |
26256096 |
T |
|
| Q |
374 |
atttccgattaaacgatgcaaggggatgcgtgagacattgtaacca |
419 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||| |||||| |
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|
| T |
26256095 |
atttttgattaaacgactcaaggggatgggtgagacattataacca |
26256050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26256447 - 26256229
Alignment:
| Q |
1 |
taaaaactttgacctcacttgtcactgttgctggtttgttctctttagcatgaaaggccacaaccttgtaagttttcgttgaatcatcataaccaaatcc |
100 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||| |||| | ||||||| | |||||||| |||||||| |||||||||||||||| || | |
|
|
| T |
26256447 |
taaaaactttgacctcacttttcgctaaagctggtttgttttcttcaacatgaaactctacaaccttataagttttgcttgaatcatcataacctaaagc |
26256348 |
T |
|
| Q |
101 |
aaactgaaaagagtttgacaaagtgtggaaaggacgaagacgatacagaggagtgctataactaaaggaccctaatttttcagatttttgtccggtggaa |
200 |
Q |
| |
|
||||||||| |||||||| | |||| ||| || || |||||| | ||| ||||||||||||||||| || |||||||| || |||||| |
|
|
| T |
26256347 |
gaactgaaaactgtttgacacatattggac--gac----actatctagaggaagggtatgactaaaggaccctaattgtttagatttttttcttgtggaa |
26256254 |
T |
|
| Q |
201 |
gggttccagaaatagatggagtagt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26256253 |
gggttccagaaatagatggagtagt |
26256229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 26236485 - 26236439
Alignment:
| Q |
51 |
tgaaaggccacaaccttgtaagttttcgttgaatcatcataaccaaa |
97 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26236485 |
tgaaaggctacaaccttgtaagtttttgttgaatcatcataaccaaa |
26236439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 24016399 - 24016362
Alignment:
| Q |
60 |
acaaccttgtaagttttcgttgaatcatcataaccaaa |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24016399 |
acaaccttataagttttcgttgaatcatcataaccaaa |
24016362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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