View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_high_27 (Length: 471)
Name: NF4125_high_27
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 37862329 - 37862794
Alignment:
| Q |
9 |
agcagagaattcaatgacgcgattaacaatatgaaatgaaaggagtcaatcttgttgatacattccttatatctgaagattttatacattccttgtatct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862329 |
agcagagaattcaatgacgcgattaacaatatgaaatgaaaggagtcaatcttgttgatacattccttatatctgaagattttatacattccttgtatct |
37862428 |
T |
|
| Q |
109 |
gaagattttatcagataacagaaaatcaaagatttatatcatgcagtgataatagtgattaattataggcataggaaacatgtgaaaagtaatcaatgag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37862429 |
gaagattttatcagataacagaaaatcaaagatttatatcacgcagtgataatcgtgattaattataggcataggaaacatgtggaaagtaatcaatgag |
37862528 |
T |
|
| Q |
209 |
gaacagaaatacaaagaaagaaagaatacatttgatt---------------------ttgggggaaaatagaatttgttgacttagtaagatgcgagga |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37862529 |
gaacagaaatacaaagaaagaaagaatacatttgattttgggcgaaaaggtaaagagcttgggggaaaatagaatttgttgacttagtaagatgtgagga |
37862628 |
T |
|
| Q |
288 |
tttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaag |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37862629 |
tttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcgagtccctcgccggttgtggcaag |
37862728 |
T |
|
| Q |
388 |
tccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862729 |
tccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
37862794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 254 - 453
Target Start/End: Complemental strand, 39030988 - 39030789
Alignment:
| Q |
254 |
aaatagaatttgttgacttagtaagatgcgaggatttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagca |
353 |
Q |
| |
|
|||||||| |||||| ||| |||| ||| |||||||||||||| ||||||| |||||||||||||||||| |||||||| || ||||||| ||||||| |
|
|
| T |
39030988 |
aaatagaacttgttgccttggtaaaatgtgaggatttaggtggccacactatggagcacaacagtctcgacagtgagtccaggtccaaaacttaaaagca |
39030889 |
T |
|
| Q |
354 |
caccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
| |
|
| |||||||||||||| || || |||||| ||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||| | | |||||||||||| |
|
|
| T |
39030888 |
cgccccattcaagtccttctcctgttgtgccaagtccttcttcttttgacttcctcctcatctcatccaaaatgaataacacggatggacttgacatgtt |
39030789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 453
Target Start/End: Original strand, 37858621 - 37858768
Alignment:
| Q |
306 |
ggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgattt |
405 |
Q |
| |
|
||||||| |||||||| | ||||||||||| || ||||| || || ||||||||||| || |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
37858621 |
ggagcactacagtctcaacagtgagtccgggcccgaaaccaaataggacaccccattccagcccctcgcctgttgtggcaagtccgtcttcttttgactt |
37858720 |
T |
|
| Q |
406 |
catcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
37858721 |
cctcctcatctcatccaagatgaataacacacatgcacttgacatgtt |
37858768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 40421178 - 40421222
Alignment:
| Q |
410 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttt |
454 |
Q |
| |
|
|||||||||||||| || |||| |||||| ||||||||||||||| |
|
|
| T |
40421178 |
ctcatctcatccaatataaatatcacacaagcacttgacatgttt |
40421222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University