View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_35 (Length: 394)

Name: NF4125_high_35
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_35
NF4125_high_35
[»] chr7 (12 HSPs)
chr7 (13-392)||(29068597-29068976)
chr7 (261-379)||(28956949-28957067)
chr7 (27-377)||(29077802-29078156)
chr7 (263-379)||(29071309-29071425)
chr7 (263-379)||(29058081-29058197)
chr7 (261-377)||(29110791-29110907)
chr7 (263-379)||(3617388-3617504)
chr7 (261-379)||(3619147-3619265)
chr7 (261-379)||(29073221-29073339)
chr7 (261-379)||(29102184-29102302)
chr7 (261-379)||(29116329-29116447)
chr7 (263-374)||(29066898-29067009)
[»] chr4 (3 HSPs)
chr4 (73-392)||(11854448-11854766)
chr4 (263-379)||(11851747-11851863)
chr4 (261-379)||(11849829-11849947)
[»] chr3 (1 HSPs)
chr3 (273-357)||(24241017-24241101)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 29068597 - 29068976
Alignment:
Q  13 catcatgctactagtcaatcattatttataagtacaaaatatcattaaagggagaatttggagtaatgatataaaggcaaatattctattttcgatttga 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29068597 catcatgctactagtcaaccattatttataagtacaaaatatcattaaagggagaatttggagtattgatataaaggcaaatattctattttcgatttga 29068696  T
Q  113 gctatatcaataaaagtatgtactgtattttcttaataacagaatggtcacaagtatatgatacatatacacatgatgagaaataaaagtacaaaataag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29068697 gctatatcaataaaagtatgtactgtattttcttaataacagaatggtcacaagtatatgatacatatacacatgatgagaaataaaagtacaaaataag 29068796  T
Q  213 taacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29068797 taacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggc 29068896  T
Q  313 acatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatgatgatgtccatc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  29068897 acatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatc 29068976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 28957067 - 28956949
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||||||||||| |||    
T  28957067 atatcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgttt 28956968  T
Q  361 ggacaaggaggttggtaat 379  Q
    |||||||||||||||||||    
T  28956967 ggacaaggaggttggtaat 28956949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 377
Target Start/End: Original strand, 29077802 - 29078156
Alignment:
Q  27 tcaatcattatttataagtacaaaatatcattaaagggagaatttggagtaatgatataaaggcaaatattctattttcgatttgagctatatcaataaa 126  Q
    |||||||||||||||||||||| | | ||| ||||| || |||||| |||| ||||||||| |||||| ||  ||||  ||||||| ||  |||||||||    
T  29077802 tcaatcattatttataagtacatatt-tcaataaagaga-aatttgcagtattgatataaaagcaaatgttaaatttaggatttgaactcaatcaataaa 29077899  T
Q  127 agtatgtactgtattttcttaat----aacagaatggtcacaagta-tatgatacatatacacatgatgagaaataaaagtacaaaataagtaacatgac 221  Q
    |||||||  |||||||||| |||    ||||||||||  ||||  | ||| ||||||| ||| ||||| | ||||||||||||| |||| |    || ||    
T  29077900 agtatgtgttgtattttctaaatttataacagaatggcaacaacaagtattatacatagacatatgataa-aaataaaagtacagaatatg----atcac 29077994  T
Q  222 taagttaaaccatagaaacacgaacaaggatttcaactc------atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcaca 315  Q
    ||| ||||||||||||||||| |||| | ||||  |  |      || ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29077995 taaattaaaccatagaaacacaaacatgaatttttaacctaaaaaatttcaagcatctgaccatgtaatgtcaaggccaccccattgttctttaggcaca 29078094  T
Q  316 tttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggta 377  Q
      |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||    
T  29078095 cctaaagctttccacacagctttggaagcatcaacaatgttgtttgtacaaggtggttggta 29078156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 29071309 - 29071425
Alignment:
Q  263 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||   || ||||||||||||||||||||||||||||||||||| |||||    
T  29071309 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29071408  T
Q  363 acaaggaggttggtaat 379  Q
    |||||||||||||||||    
T  29071409 acaaggaggttggtaat 29071425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 29058081 - 29058197
Alignment:
Q  263 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||   || ||||||||||||||||||||||||||||||||||| |||||    
T  29058081 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29058180  T
Q  363 acaaggaggttggtaat 379  Q
     ||||||||||| ||||    
T  29058181 gcaaggaggttgataat 29058197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 29110791 - 29110907
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||    
T  29110791 atatcaagcatctgaccatgtaatatcaagaccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgttt 29110890  T
Q  361 ggacaaggaggttggta 377  Q
    ||||| || ||||||||    
T  29110891 ggacacggtggttggta 29110907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 3617388 - 3617504
Alignment:
Q  263 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 362  Q
    |||||||||||||||||||||| || |||||||||||||| |||| |||||||   || ||||||||||||||||| ||||||||||||||||| |||||    
T  3617388 atcaagcatctgaccatgtaatatctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttgg 3617487  T
Q  363 acaaggaggttggtaat 379  Q
    |||||||||||||||||    
T  3617488 acaaggaggttggtaat 3617504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 3619265 - 3619147
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||| ||||||||||| || |  ||||||||||| || | ||| ||||  || |||||||||||||| || || |||||||| ||||| ||     
T  3619265 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 3619166  T
Q  361 ggacaaggaggttggtaat 379  Q
      |||||||||||||||||    
T  3619165 ttacaaggaggttggtaat 3619147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 29073339 - 29073221
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  29073339 atatcaagcatcggaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29073240  T
Q  361 ggacaaggaggttggtaat 379  Q
      |||||||||||| ||||    
T  29073239 ttacaaggaggttgataat 29073221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 29102302 - 29102184
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  29102302 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29102203  T
Q  361 ggacaaggaggttggtaat 379  Q
      |||||||||||| ||||    
T  29102202 ttacaaggaggttgataat 29102184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 29116447 - 29116329
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  29116447 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29116348  T
Q  361 ggacaaggaggttggtaat 379  Q
      |||||||||||| ||||    
T  29116347 ttacaaggaggttgataat 29116329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 29067009 - 29066898
Alignment:
Q  263 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 362  Q
    |||||||||| ||||||||||| || |  ||||||||||| |   | || |||  ||| ||||||||||||||| | |||||||||||||||||||| |     
T  29067009 atcaagcatcagaccatgtaatatccaacccaccccattgattccttgggacacctaaggctttccacacagccattgaagcatcaacaatgttattggc 29066910  T
Q  363 acaaggaggttg 374  Q
    ||| ||||||||    
T  29066909 acatggaggttg 29066898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 73 - 392
Target Start/End: Complemental strand, 11854766 - 11854448
Alignment:
Q  73 gagtaatgatataaaggcaaatattctattttcgatttgagctatatcaataaaagtatgtactgtattttcttaataacagaatggtcacaagtatatg 172  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11854766 gagtattgatataaaggcaaatattctattttggatttgagctatatcaataaaagtatgtactgtattttct-aataacagaatggtcacaagtatatg 11854668  T
Q  173 atacatatacacatgatgagaaataaaagtacaaaataagtaacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854667 atacatatacacatgatgagaaataaaagtacaaaataagtaacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatc 11854568  T
Q  273 tgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggt 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854567 tgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggt 11854468  T
Q  373 tggtaatgatgatgtccatc 392  Q
    ||||||| ||| ||| ||||    
T  11854467 tggtaatcatgttgttcatc 11854448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 263 - 379
Target Start/End: Complemental strand, 11851863 - 11851747
Alignment:
Q  263 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||   || ||||||||||||||||||||||||||||||||||| |||||    
T  11851863 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 11851764  T
Q  363 acaaggaggttggtaat 379  Q
    |||||||||||||||||    
T  11851763 acaaggaggttggtaat 11851747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 11849829 - 11849947
Alignment:
Q  261 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 360  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  11849829 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 11849928  T
Q  361 ggacaaggaggttggtaat 379  Q
      |||||||||||| ||||    
T  11849929 ttacaaggaggttgataat 11849947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 24241017 - 24241101
Alignment:
Q  273 tgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgtta 357  Q
    |||||||||||| |||||  |||||||||  || | |||||||  ||| |||||||| ||| |||||||||| ||||||||||||    
T  24241017 tgaccatgtaatttcaagttcaccccatttgtcatgaggcacacctaaggctttccatacaaccttggaagcctcaacaatgtta 24241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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