View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_high_42 (Length: 363)
Name: NF4125_high_42
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 49935720 - 49935390
Alignment:
| Q |
17 |
cctttcacctaaaaatttgttgctcatcctgtattcttatttattgaagcaaatgaagctgattaattatgcatataaccatgttacatgtttgtaggan |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
49935720 |
cctttcacctaaaaatttgttgctcatcctgtattcttatttattgaagcaaatgaagctgattaattatgcatatcaccatgttacatgttcgtaggat |
49935621 |
T |
|
| Q |
117 |
nnnnnnattcaaagtttacagtcggtggggttatattcaaaaagctctcaacaactgctcgaggtaatatcaagggatcactataactttattttccttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49935620 |
ttttttattcaaagtttacagtcggtggggttatattcaaaaagctctcaacaactgctcgaggtaatatcaagggatcactataactttattttccttt |
49935521 |
T |
|
| Q |
217 |
caatagccacaatacttgtttcatctaatttgtgctaacaaccataagtgtttatgccacgttaattttttatgtgtaatattgatgatcctaatgatat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49935520 |
caatagccacaatacttgtttcatctaatttgtgctaacaaccataagtgtttatgccacgttaattttttatgtgtaatattgatgatcctaatgatat |
49935421 |
T |
|
| Q |
317 |
ccattgcaaacgttgaagtttctttgtctgt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49935420 |
ccattgcaaacgttgaagtttctttgtctgt |
49935390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University