View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_44 (Length: 361)

Name: NF4125_high_44
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_44
NF4125_high_44
[»] chr1 (1 HSPs)
chr1 (1-361)||(3112447-3112807)


Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 3112447 - 3112807
Alignment:
Q  1 tactaatgagctgagttgaagagaaaaatccaactcaattaataattagcaggtctctttgaactcttaatttagcctttggatatagaggatcagtctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112447 tactaatgagctgagttgaagagaaaaatccaactcaattaataattagcaggtctctttgaactcttaatttagcctttggatatagaggatcagtctt 3112546  T
Q  101 caaaagtatagttatttcagttgtggacggagacgactgttcaggtcgaagttggacacttgatgaccgttcaggtcgtaaagaccaacctactgcaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112547 caaaagtatagttatttcagttgtggacggagacgactgttcaggtcgaagttggacacttgatgaccgttcaggtcgtaaagaccaacctactgcaaca 3112646  T
Q  201 cctagccccgtaatggcaatcattacattcttaatggccttgggactccttcagtggtccccaactcctctattccacacactctacggttgtagatcgt 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112647 tctagccccgtaatggcaatcattacattcttaatggccttgggactccttcagtggtccccaactcctctattccacacactctacggttgtagatcgt 3112746  T
Q  301 gaaaatgacgtgtcttatccaacatgctggctaatcatgagatgaaggatatttgctgatc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112747 gaaaatgacgtgtcttatccaacatgctggctaatcatgagatgaaggatatttgctgatc 3112807  T

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