View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_47 (Length: 345)

Name: NF4125_high_47
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_47
NF4125_high_47
[»] chr7 (13 HSPs)
chr7 (124-248)||(18221399-18221523)
chr7 (244-332)||(20585477-20585565)
chr7 (116-248)||(27745652-27745784)
chr7 (247-332)||(12466106-12466191)
chr7 (244-332)||(19282213-19282301)
chr7 (244-332)||(44374067-44374155)
chr7 (244-332)||(44382932-44383020)
chr7 (244-326)||(46386930-46387012)
chr7 (124-247)||(43970070-43970193)
chr7 (144-248)||(513879-513983)
chr7 (121-247)||(29460336-29460462)
chr7 (298-332)||(43747595-43747629)
chr7 (244-293)||(37785208-37785257)
[»] chr4 (17 HSPs)
chr4 (133-248)||(38761323-38761438)
chr4 (244-332)||(11425075-11425163)
chr4 (244-332)||(37018719-37018807)
chr4 (244-332)||(25090774-25090862)
chr4 (244-328)||(42874924-42875008)
chr4 (244-331)||(16997649-16997736)
chr4 (143-241)||(42440921-42441019)
chr4 (244-292)||(10357279-10357328)
chr4 (244-306)||(14548773-14548835)
chr4 (116-173)||(21257114-21257171)
chr4 (244-275)||(3485091-3485122)
chr4 (298-332)||(25512660-25512694)
chr4 (298-332)||(26922555-26922589)
chr4 (197-247)||(42327905-42327955)
chr4 (207-248)||(5185493-5185534)
chr4 (244-293)||(19435620-19435669)
chr4 (159-248)||(54421374-54421463)
[»] scaffold1662 (1 HSPs)
scaffold1662 (244-332)||(264-352)
[»] chr8 (16 HSPs)
chr8 (116-248)||(16484076-16484208)
chr8 (244-332)||(20179364-20179452)
chr8 (244-292)||(24713329-24713377)
chr8 (244-332)||(42818750-42818829)
chr8 (116-247)||(9180652-9180783)
chr8 (244-275)||(22259212-22259243)
chr8 (201-247)||(11629528-11629574)
chr8 (298-332)||(22344202-22344236)
chr8 (298-332)||(22355862-22355896)
chr8 (298-332)||(36304877-36304911)
chr8 (298-332)||(38988466-38988500)
chr8 (298-332)||(39019563-39019597)
chr8 (279-328)||(12577009-12577058)
chr8 (295-332)||(12577033-12577070)
chr8 (19-52)||(39321763-39321796)
chr8 (199-247)||(32230002-32230050)
[»] chr3 (23 HSPs)
chr3 (244-332)||(44269650-44269738)
chr3 (244-328)||(11258592-11258676)
chr3 (244-332)||(35065423-35065511)
chr3 (244-328)||(2842295-2842379)
chr3 (244-332)||(19884366-19884454)
chr3 (244-332)||(35353720-35353808)
chr3 (244-326)||(17519717-17519799)
chr3 (244-326)||(17534579-17534661)
chr3 (253-326)||(40811913-40811986)
chr3 (244-292)||(5215026-5215074)
chr3 (244-292)||(14508012-14508060)
chr3 (279-332)||(1208848-1208901)
chr3 (279-332)||(11258560-11258613)
chr3 (244-292)||(41173214-41173263)
chr3 (124-249)||(52964080-52964205)
chr3 (244-292)||(15932350-15932398)
chr3 (298-337)||(50756254-50756293)
chr3 (124-241)||(4741520-4741637)
chr3 (124-249)||(54548257-54548382)
chr3 (281-332)||(50351983-50352034)
chr3 (244-293)||(16728443-16728492)
chr3 (244-292)||(17693236-17693285)
chr3 (299-332)||(22842513-22842546)
[»] chr2 (13 HSPs)
chr2 (244-332)||(23969466-23969554)
chr2 (244-332)||(28653345-28653433)
chr2 (244-332)||(36839295-36839383)
chr2 (244-332)||(17306608-17306696)
chr2 (244-331)||(24515308-24515395)
chr2 (143-239)||(4244415-4244511)
chr2 (244-292)||(9975089-9975137)
chr2 (143-247)||(33054860-33054963)
chr2 (143-241)||(37670658-37670756)
chr2 (244-280)||(14693380-14693416)
chr2 (244-275)||(19358110-19358141)
chr2 (198-247)||(10748078-10748127)
chr2 (18-46)||(11682215-11682243)
[»] chr1 (19 HSPs)
chr1 (244-332)||(19675872-19675960)
chr1 (244-332)||(21046892-21046980)
chr1 (116-248)||(27643291-27643423)
chr1 (244-332)||(42912171-42912259)
chr1 (244-332)||(16059157-16059245)
chr1 (244-332)||(4596688-4596776)
chr1 (132-242)||(15846117-15846227)
chr1 (143-248)||(33978131-33978236)
chr1 (124-235)||(48408608-48408719)
chr1 (244-275)||(7052896-7052927)
chr1 (244-275)||(14238453-14238484)
chr1 (244-275)||(38887968-38887999)
chr1 (116-247)||(49508569-49508700)
chr1 (298-332)||(6833382-6833416)
chr1 (298-332)||(45496142-45496176)
chr1 (244-292)||(20587838-20587887)
chr1 (244-292)||(20592376-20592425)
chr1 (244-273)||(20634478-20634507)
chr1 (124-249)||(28037671-28037796)
[»] scaffold0146 (1 HSPs)
scaffold0146 (244-332)||(23517-23605)
[»] chr6 (9 HSPs)
chr6 (244-332)||(27126320-27126408)
chr6 (247-332)||(7825767-7825852)
chr6 (244-325)||(15891546-15891627)
chr6 (244-292)||(31733869-31733917)
chr6 (279-332)||(25920781-25920834)
chr6 (116-247)||(10158876-10159007)
chr6 (298-332)||(30674292-30674326)
chr6 (188-249)||(17215366-17215427)
chr6 (244-292)||(17318965-17319014)
[»] scaffold0111 (2 HSPs)
scaffold0111 (244-332)||(13377-13465)
scaffold0111 (244-332)||(19644-19732)
[»] scaffold1817 (1 HSPs)
scaffold1817 (244-332)||(240-327)
[»] chr5 (5 HSPs)
chr5 (244-320)||(19920767-19920843)
chr5 (116-248)||(10813067-10813199)
chr5 (143-225)||(33495063-33495145)
chr5 (298-332)||(22110893-22110927)
chr5 (298-330)||(8504636-8504668)
[»] scaffold0996 (1 HSPs)
scaffold0996 (143-248)||(1497-1602)
[»] scaffold0737 (1 HSPs)
scaffold0737 (244-292)||(5556-5604)
[»] scaffold0632 (1 HSPs)
scaffold0632 (244-292)||(327-374)
[»] scaffold0112 (1 HSPs)
scaffold0112 (276-332)||(1970-2026)
[»] scaffold0064 (1 HSPs)
scaffold0064 (244-292)||(57908-57957)
[»] scaffold0026 (1 HSPs)
scaffold0026 (244-292)||(145895-145944)
[»] scaffold0177 (1 HSPs)
scaffold0177 (244-280)||(1653-1689)
[»] scaffold0125 (1 HSPs)
scaffold0125 (279-332)||(27435-27488)
[»] scaffold0285 (1 HSPs)
scaffold0285 (280-332)||(18843-18894)
[»] scaffold1815 (1 HSPs)
scaffold1815 (244-275)||(1196-1227)
[»] scaffold1633 (1 HSPs)
scaffold1633 (244-275)||(388-419)
[»] scaffold0546 (2 HSPs)
scaffold0546 (244-275)||(7155-7186)
scaffold0546 (244-275)||(10975-11006)
[»] scaffold0207 (1 HSPs)
scaffold0207 (244-275)||(15350-15381)
[»] scaffold0149 (1 HSPs)
scaffold0149 (244-275)||(20821-20852)
[»] scaffold0109 (2 HSPs)
scaffold0109 (244-275)||(818-849)
scaffold0109 (244-275)||(6121-6152)
[»] scaffold0077 (1 HSPs)
scaffold0077 (244-275)||(33530-33561)
[»] scaffold0042 (1 HSPs)
scaffold0042 (244-275)||(47411-47442)
[»] scaffold0039 (1 HSPs)
scaffold0039 (244-275)||(10756-10787)
[»] scaffold0100 (1 HSPs)
scaffold0100 (298-332)||(10066-10100)
[»] scaffold0439 (1 HSPs)
scaffold0439 (246-275)||(11340-11369)
[»] scaffold0174 (2 HSPs)
scaffold0174 (299-332)||(4210-4243)
scaffold0174 (299-332)||(10332-10365)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 18221399 - 18221523
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    |||||||| |||  |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18221399 agcaaaaggaaacgtagtgcattttattcataaataaagagtacatagtagatggtacatcattgaaagtataggggctagggtgagataaggatgctct 18221498  T
Q  224 agcaatagtatgagcaaccctatta 248  Q
    ||||||||||||||||||| |||||    
T  18221499 agcaatagtatgagcaaccttatta 18221523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 20585565 - 20585477
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  20585565 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 20585477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 27745652 - 27745784
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataag 215  Q
    |||| |||||||||  |||| ||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||  ||||||||||| ||||||||||    
T  27745652 tttttttgagcaaagacaaaattagtgcattttatttagaaataaagagtacatagtagatggtacatcattaaaaacataggggctagggtgagataag 27745751  T
Q  216 gatgctctagcaatagtatgagcaaccctatta 248  Q
    ||||||||||| ||| ||||||||||| |||||    
T  27745752 gatgctctagcgatactatgagcaaccttatta 27745784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 12466106 - 12466191
Alignment:
Q  247 taaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  12466106 taaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgcaagttgttgtcgatg 12466191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 19282301 - 19282213
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||| |||||||||||||||||||    
T  19282301 tattaaatcattaagttgcatatgtttgtcaagttgttaaaattgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 19282213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 44374155 - 44374067
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||    
T  44374155 tattaaataattaagttgcatatgttggtcaagttgttaaagttgtaggttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 44374067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 44383020 - 44382932
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||    
T  44383020 tattaaataattaagttgcatatgttggtcaagttgttaaagttgtaggttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 44382932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 46386930 - 46387012
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||    
T  46386930 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagatgttg 46387012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 43970193 - 43970070
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    |||||| ||||  ||| |||||||| |||||||  |||| ||||| |||| |||||||||||| |||| ||| ||||||||  |  |||||||| |||||    
T  43970193 agcaaaggcaagattaatgcatttcgttcataatcaaagggtacaaagtagatggtacatcatagaaaatatgggggctaggattggataaggacgctct 43970094  T
Q  224 agcaatagtatgagcaaccctatt 247  Q
    ||||||| ||||||||||| ||||    
T  43970093 agcaatactatgagcaaccttatt 43970070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 513983 - 513879
Alignment:
Q  144 atttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaaccc 243  Q
    ||||||||| ||| ||| ||||||| |||| | |||||| |||| ||| ||| | || |||  ||| ||||||| |||||||||||| ||||||||||||    
T  513983 atttcattcgtaattaaggagtacaaagtagaaggtacaacattaaaaatatggaggttaggatgacataaggaagctctagcaatactatgagcaaccc 513884  T
Q  244 tatta 248  Q
    |||||    
T  513883 tatta 513879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 29460336 - 29460462
Alignment:
Q  121 ttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgc 220  Q
    ||||||||| ||||| ||| | |||||||||||||| ||||| ||| | |||| |||||||||||| |||| ||| |||| ||   | | ||||| | ||    
T  29460336 ttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagc 29460435  T
Q  221 tctagcaatagtatgagcaaccctatt 247  Q
    |||||||||| |||| |||||| ||||    
T  29460436 tctagcaatactatgggcaaccttatt 29460462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 43747629 - 43747595
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  43747629 gtcaatgtcgttaaagttgtaagttgttgtcgatg 43747595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 37785208 - 37785257
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagt 293  Q
    |||||||||||||||||||||||||| |||||| |  | |||||||||||    
T  37785208 tattaaatcattaagttgcatatgttagtcaagattgtcaagttgtaagt 37785257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 38761323 - 38761438
Alignment:
Q  133 aaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagt 232  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||  |||| |||||| ||||||||||||||||||||||||| |    
T  38761323 aaatttagtgcatttcattcataaataaagagtacatggtagatggtacatcattgaaaacatagaggctagggtgagataaggatgctctagcaatact 38761422  T
Q  233 atgagcaaccctatta 248  Q
    |||||||||| |||||    
T  38761423 atgagcaaccttatta 38761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 11425163 - 11425075
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  11425163 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 11425075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 37018807 - 37018719
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  37018807 tattaaatcattaagttgcatatgttggtccagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 37018719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 25090862 - 25090774
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||| |||||||||||||||||||    
T  25090862 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcattgtcattaaagttgtaagttgttgtcgatg 25090774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 42875008 - 42874924
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||| ||||    
T  42875008 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttggtgtc 42874924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 16997736 - 16997649
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgat 331  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  16997736 tattaaatcattaagttgcacatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcattaaagttgtaagttgttgtcgat 16997649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 42440921 - 42441019
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaac 241  Q
    ||||| |||| |||||||||||||| | ||| ||||||||||||||||| ||| |||| ||  ||||||||| ||||||||||||| ||||||||||||    
T  42440921 catttaattcgtaaataaagagtacgtggtagatggtacatcattgaaaatatgggggttaatgtgagataaagatgctctagcaacagtatgagcaac 42441019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 10357279 - 10357328
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10357279 tattaaatcattaagttgcatatgttggtctaagttgtttaagttgtaag 10357328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 14548835 - 14548773
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtc 306  Q
    ||||||||||||||||||||| ||||| | | ||||||||||||||||||  ||||| |||||    
T  14548835 tattaaatcattaagttgcatttgttgtttatgttgttaaagttgtaagttgttgtcgatgtc 14548773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 21257171 - 21257114
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagta 173  Q
    |||| |||||||||  |||| ||||||||||||||| | |||||||||||||||||||    
T  21257171 tttttttgagcaaagacaaaattagtgcatttcatttagaaataaagagtacatagta 21257114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 3485122 - 3485091
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  3485122 tattaaatcattaagttgcatatgttggtcaa 3485091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 25512694 - 25512660
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  25512694 gtcaatgtcgttaaagttgtaagttgttgtcgatg 25512660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 26922555 - 26922589
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  26922555 gtcaatgtcgttaaagttgtaagttgttgtcgatg 26922589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 42327905 - 42327955
Alignment:
Q  197 ggggctagagtgagataaggatgctctagcaatagtatgagcaaccctatt 247  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||| |||||    
T  42327905 ggggctagggtgagatagtgatgctctagcaatattatgagcaactctatt 42327955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 5185493 - 5185534
Alignment:
Q  207 tgagataaggatgctctagcaatagtatgagcaaccctatta 248  Q
    ||||||||||| |||||||| ||| |||||||||||||||||    
T  5185493 tgagataaggaagctctagctatactatgagcaaccctatta 5185534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 19435620 - 19435669
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagt 293  Q
    |||||||||||||||||||||||||| ||||| ||  | |||||||||||    
T  19435620 tattaaatcattaagttgcatatgttagtcaaatttgtcaagttgtaagt 19435669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 54421374 - 54421463
Alignment:
Q  159 aaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaaccctatta 248  Q
    |||||||||| ||||  || ||||| || |||| ||| ||||||||  || |||||||| |||||||||||| ||||| ||||| |||||    
T  54421374 aaagagtacaaagtagttgttacatgatagaaaatatgggggctaggatgtgataaggaagctctagcaatactatgaccaaccttatta 54421463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1662 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1662
Description:

Target: scaffold1662; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 264 - 352
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  264 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 16484076 - 16484208
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataag 215  Q
    |||| |||||||||  |||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||  |||||| |||| ||||||||||    
T  16484076 tttttttgagcaaagacaaaattagtgcatttcatttagaaataaagagtacatagtagatggtacatcattaaaaacatagggactagggtgagataag 16484175  T
Q  216 gatgctctagcaatagtatgagcaaccctatta 248  Q
    ||||||||||||||| ||||||||||| |||||    
T  16484176 gatgctctagcaatactatgagcaaccttatta 16484208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 20179364 - 20179452
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||    
T  20179364 tattaaataattaagttgcatatgttggtcaagttgttaaagttgtaggttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 20179452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 24713377 - 24713329
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24713377 tattaaatcattaagttgcatatgttggtcaagttgtttaagttgtaag 24713329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 42818750 - 42818829
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||         |||||||  ||||||||||||||||| |||||||||||||||||||    
T  42818750 tattaaatcattaagttgcatatgttggtcaagt---------tgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 42818829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 9180652 - 9180783
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaag-tataggggctagagtgagataa 214  Q
    |||| ||||||||| ||||| ||||| ||||||||| | || ||| |  |||| ||||  || ||||| || ||||| ||| |||||||| ||||||||     
T  9180652 tttttttgagcaaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgat-gaaagatatgggggctagggtgagatag 9180750  T
Q  215 ggatgctctagcaatagtatgagcaaccctatt 247  Q
     ||||||||||||||| |||||||||| |||||    
T  9180751 tgatgctctagcaatattatgagcaactctatt 9180783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 22259212 - 22259243
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  22259212 tattaaatcattaagttgcatatgttggtcaa 22259243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 11629574 - 11629528
Alignment:
Q  201 ctagagtgagataaggatgctctagcaatagtatgagcaaccctatt 247  Q
    |||| ||||||||| ||||||||||||||| |||||||||| |||||    
T  11629574 ctagggtgagataatgatgctctagcaatactatgagcaactctatt 11629528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 22344236 - 22344202
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  22344236 gtcaatgtcgttaaagttgtaagttgttgtcgatg 22344202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 22355896 - 22355862
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  22355896 gtcaatgtcgttaaagttgtaagttgttgtcgatg 22355862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 36304911 - 36304877
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  36304911 gtcaatgtcgttaaagttgtaagttgttgtcgatg 36304877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 38988500 - 38988466
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  38988500 gtcaatgtcgttaaagttgtaagttgttgtcgatg 38988466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 39019597 - 39019563
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  39019597 gtcaatgtcgttaaagttgtaagttgttgtcgatg 39019563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 12577058 - 12577009
Alignment:
Q  279 gttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtc 328  Q
    |||||||||||||||  ||||| |||||| |||| |||||||||||||||    
T  12577058 gttaaagttgtaagttgttgtcgatgtcgataaagttgtaagttgttgtc 12577009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 12577070 - 12577033
Alignment:
Q  295 tttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  12577070 tttgtccatgtcgttaaagttgtaagttgttgtcgatg 12577033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39321763 - 39321796
Alignment:
Q  19 gggcatcatggatgaaatctgagaaaactagaat 52  Q
    |||||||||||||||||||||||||||| |||||    
T  39321763 gggcatcatggatgaaatctgagaaaacaagaat 39321796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 32230002 - 32230050
Alignment:
Q  199 ggctagagtgagataaggatgctctagcaatagtatgagcaaccctatt 247  Q
    |||||| |||||||||||| |||||||| ||||| ||||| ||||||||    
T  32230002 ggctagggtgagataaggaagctctagctatagtgtgagcgaccctatt 32230050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 44269738 - 44269650
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  44269738 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 44269650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 11258676 - 11258592
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  11258676 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtc 11258592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 35065423 - 35065511
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||    
T  35065423 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttataagttgttgtcgatg 35065511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 2842295 - 2842379
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||    
T  2842295 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtccatgtcgttaaagttgtaagttgttgtc 2842379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 19884366 - 19884454
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  19884366 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgtcaaagttttaagttgttgtcgatg 19884454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 35353808 - 35353720
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||    
T  35353808 tattaaatcattaagttgtatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttatcgatg 35353720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 17519717 - 17519799
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttg 326  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||| ||||||| |||||    
T  17519717 tattaaatcattaagttgcatatgttggtgaagttgttaaagttgtaagttgttttcaatgtcgttaaagttgtaagatgttg 17519799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 17534579 - 17534661
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttg 326  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||| ||||||| |||||    
T  17534579 tattaaatcattaagttgcatatgttggtgaagttgttaaagttgtaagttgttttcaatgtcgttaaagttgtaagatgttg 17534661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 40811986 - 40811913
Alignment:
Q  253 attaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttg 326  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||    
T  40811986 attaagttgtatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagatgttg 40811913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 5215074 - 5215026
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5215074 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 5215026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 14508060 - 14508012
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14508060 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 14508012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 1208848 - 1208901
Alignment:
Q  279 gttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||   |||||||||||||||| |||||||||||||||||||    
T  1208848 gttaaagttgtaagttggtgtcaatgtcgttaaagttgtaagttgttgtcgatg 1208901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 11258613 - 11258560
Alignment:
Q  279 gttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  11258613 gttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgacgatg 11258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 41173214 - 41173263
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  41173214 tattaaatcattaagttgcatatgttggtctaagttgtttaagttgtaag 41173263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 52964080 - 52964205
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    |||||| ||||| ||| |||||||||||||  || |||||||||| |||  ||||||||  ||  |||  || ||||||||  ||||||||||| | |||    
T  52964080 agcaaaggcaaaattaatgcatttcattcaagaacaaagagtacaaagttgatggtacactataaaaaagatgggggctaggatgagataaggaagatct 52964179  T
Q  224 agcaatagtatgagcaaccctattaa 249  Q
    ||| ||| ||||||||||||||||||    
T  52964180 agctatactatgagcaaccctattaa 52964205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 15932350 - 15932398
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||||    
T  15932350 tattaaatcattaagttgtatatgttggtcaagttgtttaaattgtaag 15932398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 50756254 - 50756293
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatgatgtc 337  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  50756254 gtcaatgtcgttaaatttgtaagttgttgtcgatgttgtc 50756293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 4741520 - 4741637
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    ||||||| |||| ||| | |||||||||||||| |||| |||| | ||||   |||||||||   ||| ||| |||||||| ||  ||||| ||||||||    
T  4741520 agcaaaaacaaagttaattcatttcattcataattaaaaagtataaagtagtcggtacatcacaaaaaatatgggggctagggttggataaagatgctct 4741619  T
Q  224 agcaatagtatgagcaac 241  Q
    ||||||| ||||||||||    
T  4741620 agcaatactatgagcaac 4741637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 54548257 - 54548382
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    |||||| ||||| ||| || ||||||||||  || |||||||||| |||  ||||||||  ||  |||  || ||||||||  ||||||||||| |||||    
T  54548257 agcaaaggcaaaattaatggatttcattcaagaacaaagagtacaaagttgatggtacactataaaaaagatgggggctaggatgagataaggaagctct 54548356  T
Q  224 agcaatagtatgagcaaccctattaa 249  Q
    ||| ||| |||||||||| |||||||    
T  54548357 agctatactatgagcaactctattaa 54548382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 50351983 - 50352034
Alignment:
Q  281 taaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||| |||||  ||||| ||||||||||| |||||||||||||||||||    
T  50351983 taaagttataagttgttgtccatgtcgttaaagttgtaagttgttgtcgatg 50352034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 16728492 - 16728443
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagt 293  Q
    |||||||||||||||||||||||||| |||||| |  | |||||||||||    
T  16728492 tattaaatcattaagttgcatatgttagtcaaggttgtcaagttgtaagt 16728443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 17693285 - 17693236
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    |||||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  17693285 tattaaattattaagtagcatatgttggtctaagttgtttaagttgtaag 17693236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 22842513 - 22842546
Alignment:
Q  299 tcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||| |||||||||||||||||||    
T  22842513 tcaatgtcgttaaagttgtaagttgttgtcgatg 22842546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 23969466 - 23969554
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  23969466 tattaaatcattaagttgcatatgttggtaaagttgttaaagttgtaagttgttgtcaatgtcgttaaatttgtaagttgttgtcgatg 23969554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 28653345 - 28653433
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  28653345 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 28653433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 36839383 - 36839295
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  36839383 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 36839295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 17306696 - 17306608
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||    
T  17306696 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtatgttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 17306608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 24515395 - 24515308
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||    
T  24515395 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgcaagttgttgtcgat 24515308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 4244511 - 4244415
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagca 239  Q
    ||||||||||||||| |||||||||| || | ||||||||| ||||||| | || | |||||  |||||||| ||||||||||| ||| ||||||||    
T  4244511 catttcattcataaacaaagagtacaaagaagatggtacataattgaaaatgtaagagctaggatgagataaagatgctctagctatactatgagca 4244415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 9975137 - 9975089
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9975137 tattaaatcattaagttacatatgttggtcaaattgttaaagttgtaag 9975089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 33054963 - 33054860
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaacc 242  Q
    ||||||||| |||| |||||| |||| | ||| |||||||||||  ||  |||||||||||| |||||||| |||||||||||| ||||  |||||||||    
T  33054963 catttcattaataattaaagaatacaaa-tatgtggtacatcatcaaagatataggggctagggtgagatagggatgctctagctatagagtgagcaacc 33054865  T
Q  243 ctatt 247  Q
     ||||    
T  33054864 atatt 33054860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 37670658 - 37670756
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaac 241  Q
    |||||||| ||||| ||||| ||||| ||||   ||||||||||  ||| ||| |||||||| ||| ||||| ||||||||||||||| ||||| ||||    
T  37670658 catttcatccataattaaagggtacaaagtagtcggtacatcataaaaaatatgggggctagggtgggataaagatgctctagcaatactatgaacaac 37670756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 14693416 - 14693380
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgt 280  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14693416 tatttaatcattaagttgcatatgttggtcaagttgt 14693380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 19358141 - 19358110
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  19358141 tattaaatcattaagttgcatatgttggtcaa 19358110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 10748127 - 10748078
Alignment:
Q  198 gggctagagtgagataaggatgctctagcaatagtatgagcaaccctatt 247  Q
    ||||||| ||||||||  ||||||||||||||| |||||||||| |||||    
T  10748127 gggctagggtgagatagtgatgctctagcaatattatgagcaactctatt 10748078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 11682243 - 11682215
Alignment:
Q  18 ggggcatcatggatgaaatctgagaaaac 46  Q
    |||||||||||||||||||||||||||||    
T  11682243 ggggcatcatggatgaaatctgagaaaac 11682215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 19675960 - 19675872
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  19675960 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 19675872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 21046892 - 21046980
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  21046892 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgttgtcgatg 21046980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 27643291 - 27643423
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataag 215  Q
    |||| |||||||||  |||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||  |||||| |||| ||||||||||    
T  27643291 tttttttgagcaaagacaaaattagtgcatttcatttagaaataaagagtacatagtagatggtacatcattaaaaacatagggactagggtgagataag 27643390  T
Q  216 gatgctctagcaatagtatgagcaaccctatta 248  Q
    ||||||||||||||| ||||||||||| |||||    
T  27643391 gatgctctagcaatactatgagcaaccttatta 27643423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 42912259 - 42912171
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||||||||    
T  42912259 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcattaaagttgtaagttgttgtcgatg 42912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 16059157 - 16059245
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||| ||||||    
T  16059157 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtagttaaagttgtaagttgttatcgatg 16059245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 4596688 - 4596776
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||| |||||||| |||||||||||||||||||    
T  4596688 tattaaatcattaagttgcatatgttgatcgagttgttaaagttgtaagttgttgtcaatttcgttaaagttgtaagttgttgtcgatg 4596776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 15846117 - 15846227
Alignment:
Q  132 caaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatag 231  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||   ||||||| ||| || | ||||||||| ||||||||||     
T  15846117 caaatttagtgcatttcactcataaataaagagtacatagtagatggtatatcattgaagacataggggttagggtaatataaggatgttctagcaatac 15846216  T
Q  232 tatgagcaacc 242  Q
    |||||| ||||    
T  15846217 tatgagaaacc 15846227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 33978131 - 33978236
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaacc 242  Q
    |||||||||||||| ||| ||||||| |||| | |||||| |||| ||| ||| ||||||||  ||| ||||||| |||||||||||| |||||||||||    
T  33978131 catttcattcataattaaggagtacaaagtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactatgagcaacc 33978230  T
Q  243 ctatta 248  Q
    ||||||    
T  33978231 ctatta 33978236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 48408608 - 48408719
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    ||||||||||| ||||||| |||||||||||||||||| |||| ||| || || |||  | || ||||||| ||||| |||||||||||||  ||| |||    
T  48408608 agcaaaagcaagtttagtgtatttcattcataaataaatagtaaataatagatagtatgttatagaaagtagaggggttagagtgagataaaaatgttct 48408707  T
Q  224 agcaatagtatg 235  Q
    ||||||||||||    
T  48408708 agcaatagtatg 48408719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 7052896 - 7052927
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  7052896 tattaaatcattaagttgcatatgttggtcaa 7052927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 14238453 - 14238484
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  14238453 tattaaatcattaagttgcatatgttggtcaa 14238484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 38887968 - 38887999
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  38887968 tattaaatcattaagttgcatatgttggtcaa 38887999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 49508700 - 49508569
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataag 215  Q
    |||| |||||||| | |||| ||| | ||| |||||||  ||||||| || || | || |||||||||||| |||| ||| |||||||| ||| ||||||    
T  49508700 tttttttgagcaacatcaaaattaattcatatcattcaataataaagtgttcaaactagatggtacatcatagaaaatatgggggctagggtgggataag 49508601  T
Q  216 gatgctctagcaatagtatgagcaaccctatt 247  Q
    || |||||||| ||  ||||||| ||| ||||    
T  49508600 gaagctctagctatgttatgagctaccttatt 49508569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 6833416 - 6833382
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  6833416 gtcaatgtcgttaaagttgtaagttgttgtcgatg 6833382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 45496176 - 45496142
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  45496176 gtcaatgtcgttaaagttgtaagttgttgtcgatg 45496142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 20587887 - 20587838
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    ||||||||||||||||| |||||||||||| |||||||| ||| ||||||    
T  20587887 tattaaatcattaagttacatatgttggtctaagttgtttaagctgtaag 20587838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 20592425 - 20592376
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    ||||||||||||||||| |||||||||||| |||||||| ||| ||||||    
T  20592425 tattaaatcattaagttacatatgttggtctaagttgtttaagctgtaag 20592376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 20634478 - 20634507
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc 273  Q
    ||||||||||||||||||||||||||||||    
T  20634478 tattaaatcattaagttgcatatgttggtc 20634507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 28037796 - 28037671
Alignment:
Q  124 agcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctct 223  Q
    |||||| ||||| ||| |||||||||||||  || |||||||||| | |  | ||||||  ||  |||  || ||||||||  |||||||| || |||||    
T  28037796 agcaaaggcaaaattaatgcatttcattcaagaacaaagagtacaaatttgaaggtacactataaaaaagatgggggctaggatgagataaagaagctct 28037697  T
Q  224 agcaatagtatgagcaaccctattaa 249  Q
    ||| ||| ||||||||||||||||||    
T  28037696 agctatactatgagcaaccctattaa 28037671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 23605 - 23517
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||    
T  23605 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttttaagttgttgtcgatg 23517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 27126320 - 27126408
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||||||||    
T  27126320 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtctttaaagttgtaagttgttgtcgatg 27126408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 7825852 - 7825767
Alignment:
Q  247 taaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||    
T  7825852 taaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgttgttaaagttgtaagttgttgtcgatg 7825767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 15891546 - 15891627
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgtt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  15891546 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcgttaaagttgtaagttgtt 15891627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 31733917 - 31733869
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31733917 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 31733869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 25920834 - 25920781
Alignment:
Q  279 gttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||| |||||  | ||||||||||||||| |||||||||||||||||||    
T  25920834 gttaaagttataagttgtggtcaatgtcgttaaagttgtaagttgttgtcgatg 25920781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 10158876 - 10159007
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaag-tataggggctagagtgagataa 214  Q
    |||| ||||||||| ||||| ||||| ||||||||| | || ||| |  |||| ||||  || ||||| || ||||| ||| |||||||| ||||||||     
T  10158876 tttttttgagcaaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgat-gaaagatatgggggctagggtgagatag 10158974  T
Q  215 ggatgctctagcaatagtatgagcaaccctatt 247  Q
     ||||||||||||||| |||||||||| |||||    
T  10158975 tgatgctctagcaatattatgagcaactctatt 10159007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 30674292 - 30674326
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  30674292 gtcaatgtcgttaaagttgtaagttgttgtcgatg 30674326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 17215427 - 17215366
Alignment:
Q  188 gaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaaccctattaa 249  Q
    ||||| ||||||| ||| ||| |||||||||||||| |||||  ||||||||||| ||||||    
T  17215427 gaaagcataggggttagggtgtgataaggatgctcttgcaatgttatgagcaaccttattaa 17215366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 17318965 - 17319014
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    ||||| |||||||||| ||||||||||||| |||||||| ||||||||||    
T  17318965 tattatatcattaagtagcatatgttggtctaagttgtttaagttgtaag 17319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 13377 - 13465
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||  ||||||||||||||||||    
T  13377 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcattaaagctgtaagttgttgtcgatg 13465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 19644 - 19732
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||  ||||||||||||||||||    
T  19644 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatgtcattaaagctgtaagttgttgtcgatg 19732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1817 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1817
Description:

Target: scaffold1817; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 240 - 327
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||||||| |||||| || ||||||||||||||||    
T  240 tattaaatcattaagttgcatatgttggtcatgtt-ttaaagttgtaagttgttgtcaatgtagttaaagttttaagttgttgtcgatg 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 19920843 - 19920767
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaag 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | ||| || |||||||    
T  19920843 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaagttgttgtcaatattgtttaagttgtaag 19920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 10813067 - 10813199
Alignment:
Q  116 ttttgttgagcaaaagcaaatttagtgcatttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataag 215  Q
    |||| ||||||||| ||||| ||| |||||||||||||  || |||||||||| |||  | ||||||  ||  |||  || ||||||||  |||||||||    
T  10813067 tttttttgagcaaaggcaaaattaatgcatttcattcaagaacaaagagtacaaagttgaaggtacactataaaaaagatgggggctaggatgagataag 10813166  T
Q  216 gatgctctagcaatagtatgagcaaccctatta 248  Q
    || |||||||| ||| |||||||||||||||||    
T  10813167 gaagctctagctatactatgagcaaccctatta 10813199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 33495063 - 33495145
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctag 225  Q
    ||||||||||||||| |||||||||| || | |||||| || ||||||| | ||||| ||||| ||||||||  |||||||||    
T  33495063 catttcattcataaacaaagagtacaaagaagatggtaaataattgaaaatgtagggactagaatgagataaaaatgctctag 33495145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 22110927 - 22110893
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  22110927 gtcaatgtcgttaaagttgtaagttgttgtcgatg 22110893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 8504636 - 8504668
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcga 330  Q
    ||||||||||||||| |||||||||||||||||    
T  8504636 gtcaatgtcgttaaagttgtaagttgttgtcga 8504668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 1497 - 1602
Alignment:
Q  143 catttcattcataaataaagagtacatagtatatggtacatcattgaaagtataggggctagagtgagataaggatgctctagcaatagtatgagcaacc 242  Q
    |||||||||||||| ||| ||||||| |||| | |||||| |||| ||| ||| ||||||||  ||| ||||||| |||||||||||| |||||||||||    
T  1497 catttcattcataattaaggagtacaaagtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactatgagcaacc 1596  T
Q  243 ctatta 248  Q
    ||||||    
T  1597 ctatta 1602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 5556 - 5604
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5556 tattaaatcattaagttgcatatgttggtcaagttgtttaagttgtaag 5604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 374 - 327
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  374 tattaaatcattaagttgcatatgttggtcaagttgtt-aagttgtaag 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 2026 - 1970
Alignment:
Q  276 gttgttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||||||  | ||||||||||||||| |||||||||||||||||||    
T  2026 gttgttaaagttgtaagttgtcgtcaatgtcgttaaagttgtaagttgttgtcgatg 1970  T

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Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 57957 - 57908
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  57957 tattaaatcattaagttgcatatgttggtctaagttgtttaagttgtaag 57908  T

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Target: scaffold0026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 145944 - 145895
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtc-aagttgttaaagttgtaag 292  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  145944 tattaaatcattaagttgcatatgttggtctaagttgtttaagttgtaag 145895  T

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Target: scaffold0177 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 1689 - 1653
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaagttgt 280  Q
    |||||||||||||||||||||||||||||||||||||    
T  1689 tattaaatcattaagttgcatatgttggtcaagttgt 1653  T

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Target: scaffold0125 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 27488 - 27435
Alignment:
Q  279 gttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||||  |||||||||| |||||| |||||||||||| ||||||    
T  27488 gttaaagttgtaagttgttgtcaatgtagttaaagttgtaagttgttatcgatg 27435  T

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Target: scaffold0285 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 18894 - 18843
Alignment:
Q  280 ttaaagttgtaagtgtttgtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||  || |||||||||||||| |||||||||||||||||||    
T  18894 ttaaagttgtaagttgttatcaatgtcgttaaa-ttgtaagttgttgtcgatg 18843  T

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Target: scaffold1815 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1815
Description:

Target: scaffold1815; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 1227 - 1196
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  1227 tattaaatcattaagttgcatatgttggtcaa 1196  T

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Target: scaffold1633 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 419 - 388
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  419 tattaaatcattaagttgcatatgttggtcaa 388  T

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Target: scaffold0546 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 7186 - 7155
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  7186 tattaaatcattaagttgcatatgttggtcaa 7155  T

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Target: scaffold0546; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 11006 - 10975
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  11006 tattaaatcattaagttgcatatgttggtcaa 10975  T

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Target: scaffold0207 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 15350 - 15381
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  15350 tattaaatcattaagttgcatatgttggtcaa 15381  T

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Target: scaffold0149 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 20852 - 20821
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  20852 tattaaatcattaagttgcatatgttggtcaa 20821  T

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Target: scaffold0109 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 818 - 849
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  818 tattaaatcattaagttgcatatgttggtcaa 849  T

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Target: scaffold0109; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 6121 - 6152
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  6121 tattaaatcattaagttgcatatgttggtcaa 6152  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 33561 - 33530
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  33561 tattaaatcattaagttgcatatgttggtcaa 33530  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 47411 - 47442
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  47411 tattaaatcattaagttgcatatgttggtcaa 47442  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 10756 - 10787
Alignment:
Q  244 tattaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  10756 tattaaatcattaagttgcatatgttggtcaa 10787  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 10066 - 10100
Alignment:
Q  298 gtcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    ||||||||||||||| |||||||||||||||||||    
T  10066 gtcaatgtcgttaaagttgtaagttgttgtcgatg 10100  T

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Target: scaffold0439 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Complemental strand, 11369 - 11340
Alignment:
Q  246 ttaaatcattaagttgcatatgttggtcaa 275  Q
    ||||||||||||||||||||||||||||||    
T  11369 ttaaatcattaagttgcatatgttggtcaa 11340  T

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Target: scaffold0174 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 4243 - 4210
Alignment:
Q  299 tcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||| |||||||||||||||||||    
T  4243 tcaatgtcgttaaagttgtaagttgttgtcgatg 4210  T

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Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 10365 - 10332
Alignment:
Q  299 tcaatgtcgttaaatttgtaagttgttgtcgatg 332  Q
    |||||||||||||| |||||||||||||||||||    
T  10365 tcaatgtcgttaaagttgtaagttgttgtcgatg 10332  T

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