View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_high_51 (Length: 333)
Name: NF4125_high_51
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 54013086 - 54012782
Alignment:
| Q |
19 |
agaagcctattaaatttcccctgcatgatttatctacctttcatccttttgtgttgaactggcaagacagaagaaaatcattagaaatgagcatgcattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54013086 |
agaagcctattaaatttcccctgcatgatttatctacctttcatccttttgtgttgaactggcaagacagaagaaaatcattagaaatgagcctgcattt |
54012987 |
T |
|
| Q |
119 |
atctatatagtggtccaaccaatgtgtattgattcatgtctttttctatgctatgcagatatcacaatcttcaccacactgaaaaggacaccaatttctg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54012986 |
atctatatagtggtccaaccaatgtgtattgattcatgtctttttctatgctatgcagatatcacaatcttcaccacactgaaaaggacaccaatttctg |
54012887 |
T |
|
| Q |
219 |
cctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatggacattacacgaaacattaagttcaggttcaggtaattaacttgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54012886 |
cctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatggacattacacgaaacattaagttcaggttcaggtaattaacttgtc |
54012787 |
T |
|
| Q |
319 |
ctatg |
323 |
Q |
| |
|
||||| |
|
|
| T |
54012786 |
ctatg |
54012782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University