View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_53 (Length: 322)
Name: NF4125_high_53
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 7786276 - 7786474
Alignment:
| Q |
18 |
aacacaaccccacaaaaccagcttagaaatcgtggttgggcctaacagtaacatcatagaaaaaagttgaaatctcttcaaagataaactgtaaaatgtt |
117 |
Q |
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| T |
7786276 |
aacacaaccccacaaaaccagcttagaaatcgtggttgggtctaacagtaacatcatagaaaaaagttgaaatctcttcaaagat-aactgtaaaatgtt |
7786374 |
T |
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| Q |
118 |
cattagtgcttctttaataaaaaataatttctacttctccaattttt-atttnnnnnnnnnnnnngtatataactaccttgatacacacaatggccttac |
216 |
Q |
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| T |
7786375 |
cattagtgcttctttaataaaaaataatttctactcctccaatttttaatttttttttaaaaaaagtctataactaccttgatacacacaatggccttac |
7786474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 7786519 - 7786574
Alignment:
| Q |
260 |
atttcatcacaattcacaatacctaggctctagaatgtgtcaacaggcctttgctt |
315 |
Q |
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| T |
7786519 |
atttcatcacaattcacaatacctaggctctagaatgtgtcaacagacctttgctt |
7786574 |
T |
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