View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_high_6 (Length: 793)
Name: NF4125_high_6
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 12 - 777
Target Start/End: Original strand, 1947909 - 1948674
Alignment:
| Q |
12 |
aagggttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1947909 |
aagggttagaggatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaa |
1948008 |
T |
|
| Q |
112 |
atttatgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1948009 |
atttatgcaatgcaagaaggtgcaacaaaaagggtagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgt |
1948108 |
T |
|
| Q |
212 |
tgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgtt |
311 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
1948109 |
tgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatgtt |
1948208 |
T |
|
| Q |
312 |
gattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgcttgan |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1948209 |
gattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagcattaaagtctccgaaagtgcacatttgcttgat |
1948308 |
T |
|
| Q |
412 |
nnnnnnnacgacatgattgtgcctaaattagaaacaggaaacgacgttgctatcgatgttgaaattcaacaagaagaggaacaagacaaaggtgaagatg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1948309 |
tttttttacgacatgattgtgcctaaattagaaacaggaaacgacgttactattgatgttgaaattcaacaagaagaggaacaagacaaaggtgaagatg |
1948408 |
T |
|
| Q |
512 |
aaaattcaaaagctgagtctagttatgttaaacaatcactcaatgaaatttggaggattctttcaaaacttaacaaaggacccatgaaatcactcaaaag |
611 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1948409 |
aaaattcaaaaggtgagtctagttatgttaaacaatcactcaatgaaatttggaggattctttcaaaacttaacaaaggacccatgaaatcactcaaaag |
1948508 |
T |
|
| Q |
612 |
ggttcttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcataagcaatcttccaggaggtaaacttctaaaacaacctattgaatct |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948509 |
ggttcttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcataagcaatcttccaggaggtaaacttctaaaacaacctattgaatct |
1948608 |
T |
|
| Q |
712 |
ttattttcctctaaagaaaaaggtgatgaagaaaaacaagaaaccgaaaattctagtactcttatt |
777 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1948609 |
ttatttttctctaaagaaaaaggtgatgaagaaaaacaagaaaccgaaaattctagtactcttatt |
1948674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 16 - 767
Target Start/End: Complemental strand, 1978493 - 1977745
Alignment:
| Q |
16 |
gttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaattt |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1978493 |
gttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttactcgagttacttcaaattt |
1978394 |
T |
|
| Q |
116 |
atgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaa |
215 |
Q |
| |
|
|||||||||||||||||| | |||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1978393 |
atgcaatgcaagaaggtgaaccaaagagggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaa |
1978294 |
T |
|
| Q |
216 |
agacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1978293 |
agacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgatt |
1978194 |
T |
|
| Q |
316 |
ttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgcttgannnnn |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1978193 |
ttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaaaagtttccaagcattaaagtctccgaaagtgcacatttgcttgattttt |
1978094 |
T |
|
| Q |
416 |
nnnacgacatgattgtgcctaaattagaaacaggaaacgacgttgctatcgatgttgaaattcaacaagaagaggaacaagacaaaggtgaagatgaaaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1978093 |
tttacgacatgattgtgcctaaattagaaacaggaaacgacgttactattgatgttgagattcaacaagaagaggaacaagacaaaggtgaagatgaaaa |
1977994 |
T |
|
| Q |
516 |
ttcaaaagctgagtctagttatgttaaacaatcactcaatgaaatttggaggattctttcaaaacttaacaaaggacccatgaaatcactcaaaagggtt |
615 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| || |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||| |
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|
| T |
1977993 |
ttcaaaaggtgagtctagttatgttaagcaaccattcaatgaaatatggaggattctttcaaaacatatcaaaggacccatgaaatcactcaacaggg-- |
1977896 |
T |
|
| Q |
616 |
cttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcataagcaatcttccaggaggtaaacttctaaaacaacctattgaatctttat |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1977895 |
-ttgtatcaagacctttgaaagtgcttgtaaagtttccatggaaaatcatatccaatcttccaggaggtaaacttctaaaacaacctgttgaatctttat |
1977797 |
T |
|
| Q |
716 |
tttcctctaaagaaaaaggtgatgaagaaaaacaagaaaccgaaaattctag |
767 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
1977796 |
ttttctctaaagaaaaaggcgatgaagaaaaacaagaaaatgaaaattctag |
1977745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 1985407 - 1984979
Alignment:
| Q |
17 |
ttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaattta |
116 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||| |||||||||| |||||| |||| |
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|
| T |
1985407 |
ttagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcctacttgagttccttcaatttta |
1985308 |
T |
|
| Q |
117 |
tgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaa |
216 |
Q |
| |
|
||| ||||||||| | | ||| || | || |||| || | |||||| ||||| || |||||| ||| || | || | ||| ||||||||| |||| |
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|
| T |
1985307 |
tgccatgcaagaa---gaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgcaattttgagg |
1985211 |
T |
|
| Q |
217 |
gacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactc---tcatcaaaagaagctgctgatgaaatgttga |
313 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||| || |||||| ||||| ||||||||| |||||| |
|
|
| T |
1985210 |
gatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaaaatgctgatgatgtgttga |
1985111 |
T |
|
| Q |
314 |
ttttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgcttgannn |
413 |
Q |
| |
|
| || |||| |||| | ||||||||| | | |||||| || |||||| ||||||||| ||| | ||| |||||| || ||||||||||||| || |
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|
| T |
1985110 |
tattgatgtgtataaggttgtttaaagagatttcaccctttaagatgtttgaagagtatcctaacattcaagtcttagagtgtgcacatttgctagattt |
1985011 |
T |
|
| Q |
414 |
nnnnnacgacatgattgtgcctaaattagaaa |
445 |
Q |
| |
|
| |||||||||||||| |||||||||| |
|
|
| T |
1985010 |
tttgtatgacatgattgtgccaaaattagaaa |
1984979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 356
Target Start/End: Original strand, 5625104 - 5625300
Alignment:
| Q |
160 |
atgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatggttttga |
259 |
Q |
| |
|
||||||||||| |||| |||| || || |||| || |||||||||||| ||||||||||| || |||||||| |||||||| || ||| | |||||| |
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|
| T |
5625104 |
atgtcacatttgtttgattatggagggaggaaattaggtcataatgcaatcttgaaagacatagtaatgcttgaaaatcaaatccctttatttattttga |
5625203 |
T |
|
| Q |
260 |
gaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgtttaaacaaacttcacctttcaa |
356 |
Q |
| |
|
|||| || | ||||| ||| || ||||| ||| || ||||| |||||||| || ||||||||||| |||| |||| | | ||| |||||||| |
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|
| T |
5625204 |
gaaagatgttggagtttaaattcacatcacttgaattagcagatgacatgttgatattaatgtttataggattgtataaagagatttctcctttcaa |
5625300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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