View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_60 (Length: 269)

Name: NF4125_high_60
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_60
NF4125_high_60
[»] chr1 (8 HSPs)
chr1 (1-254)||(48701070-48701323)
chr1 (145-254)||(48693772-48693881)
chr1 (160-254)||(48697785-48697879)
chr1 (70-146)||(48693907-48693983)
chr1 (70-146)||(48697926-48698002)
chr1 (70-144)||(48687584-48687658)
chr1 (191-254)||(48680941-48681007)
chr1 (190-254)||(48687501-48687565)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 48701323 - 48701070
Alignment:
Q  1 tagctaacaagtactttagggctatatatttatttgtgtctaatcaattccatatgatctatctattcttacttgtgcccttcccctggactaggaccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701323 tagctaacaagtactttagggctatatatttatttgtgtctaaacaattccatatgatctatctattcttacttgtgcccttcccctggactaggaccag 48701224  T
Q  101 aatgcttaatctctccaagaacttgaactgtgttgagtttgtggccaacaccaccagagcttggaccagaatgcttcatcccttcaaggttttgaagctt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701223 aatgcttaatctctccaagaacttgaactgtgtcgagtttgtggccaacaccaccagagcttggaccagaatgcttcatcccttcaaggttttgaagctt 48701124  T
Q  201 tttaaacctgtgtccaactccaggggatggaccagctcctttcaatgtcctgaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701123 tttaaacctgtgtccaactccaggggatggaccagctcctttcaatgtcctgaa 48701070  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 48693881 - 48693772
Alignment:
Q  145 ccaacaccaccagagcttggaccagaatgcttcatcccttcaaggttttgaagctttttaaacctgtgtccaactccaggggatggaccagctcctttca 244  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||  ||||| |||||||||||||||||||    
T  48693881 ccaacaccaccagaacttggaccagaatccttcatcccttcaagattttgaagctttttaagcctgtgtccaatcccaggagatggaccagctcctttca 48693782  T
Q  245 atgtcctgaa 254  Q
    ||||||||||    
T  48693781 atgtcctgaa 48693772  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 48697879 - 48697785
Alignment:
Q  160 cttggaccagaatgcttcatcccttcaaggttttgaagctttttaaacctgtgtccaactccaggggatggaccagctcctttcaatgtcctgaa 254  Q
    ||||||||||||| |||||||||| |||   ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48697879 cttggaccagaatccttcatccctccaataatttgaagctttttaagcctgtgtccaattccaggggatggaccagctcctttcaatgtcctgaa 48697785  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 48693983 - 48693907
Alignment:
Q  70 tacttgtgcccttcccctggactaggaccagaatgcttaatctctccaagaacttgaactgtgttgagtttgtggcc 146  Q
    |||||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||| |||||    
T  48693983 tacttgtgcccttcacctggactaggtccagaatgcttaatcactccaataacttgaactgtgttgaatttttggcc 48693907  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 48698002 - 48697926
Alignment:
Q  70 tacttgtgcccttcccctggactaggaccagaatgcttaatctctccaagaacttgaactgtgttgagtttgtggcc 146  Q
    |||||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||| |||||    
T  48698002 tacttgtgcccttcacctggactaggtccagaatgcttaatcactccaataacttgaactgtgttgaatttttggcc 48697926  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 48687658 - 48687584
Alignment:
Q  70 tacttgtgcccttcccctggactaggaccagaatgcttaatctctccaagaacttgaactgtgttgagtttgtgg 144  Q
    |||||||||||||| || |||||||||||||||||||||||| | |||||| ||||||||||||| || ||||||    
T  48687658 tacttgtgcccttcaccaggactaggaccagaatgcttaatcacaccaagaccttgaactgtgttaagcttgtgg 48687584  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 48681007 - 48680941
Alignment:
Q  191 tttgaagctttttaaacctgtgtccaactccaggggatggaccag---ctcctttcaatgtcctgaa 254  Q
    |||||||||||||||   |||| ||||||||||||||||||||||   || ||||||||||||||||    
T  48681007 tttgaagctttttaagtttgtgcccaactccaggggatggaccagagtcttctttcaatgtcctgaa 48680941  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 48687565 - 48687501
Alignment:
Q  190 ttttgaagctttttaaacctgtgtccaactccaggggatggaccagctcctttcaatgtcctgaa 254  Q
    |||||||| ||||| | | |||||||||| |||||||||||||||||  |||| |||||||||||    
T  48687565 ttttgaaggtttttgagcttgtgtccaacaccaggggatggaccagcatcttttaatgtcctgaa 48687501  T

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