View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_high_63 (Length: 252)

Name: NF4125_high_63
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_high_63
NF4125_high_63
[»] chr1 (13 HSPs)
chr1 (58-245)||(11469081-11469268)
chr1 (58-229)||(14925222-14925390)
chr1 (58-166)||(14924674-14924782)
chr1 (58-166)||(31787478-31787586)
chr1 (65-166)||(11469705-11469806)
chr1 (83-166)||(31788216-31788299)
chr1 (87-164)||(7463444-7463521)
chr1 (87-164)||(11426882-11426959)
chr1 (87-153)||(37889908-37889974)
chr1 (88-162)||(38618260-38618334)
chr1 (87-164)||(7464012-7464089)
chr1 (58-124)||(11031431-11031497)
chr1 (82-150)||(29334238-29334306)
[»] chr4 (31 HSPs)
chr4 (58-245)||(6246784-6246971)
chr4 (58-166)||(6247410-6247519)
chr4 (63-166)||(10421521-10421624)
chr4 (106-229)||(10420965-10421085)
chr4 (58-164)||(15481035-15481141)
chr4 (62-166)||(15481510-15481614)
chr4 (88-164)||(50710359-50710435)
chr4 (58-161)||(30808621-30808724)
chr4 (88-161)||(53664242-53664315)
chr4 (58-164)||(45331395-45331501)
chr4 (59-124)||(25370507-25370572)
chr4 (58-126)||(232029-232097)
chr4 (72-164)||(45330579-45330671)
chr4 (112-164)||(50709713-50709765)
chr4 (58-164)||(30809447-30809553)
chr4 (64-124)||(11680282-11680343)
chr4 (64-124)||(11688561-11688622)
chr4 (65-105)||(47377599-47377639)
chr4 (88-164)||(53665028-53665104)
chr4 (87-162)||(6680286-6680361)
chr4 (58-124)||(12590184-12590251)
chr4 (85-124)||(13868335-13868374)
chr4 (58-124)||(25655620-25655687)
chr4 (72-135)||(33369923-33369986)
chr4 (58-105)||(47376852-47376899)
chr4 (58-124)||(11681256-11681322)
chr4 (58-124)||(11689535-11689601)
chr4 (112-154)||(13856645-13856687)
chr4 (58-124)||(38014904-38014970)
chr4 (58-124)||(46765150-46765216)
chr4 (72-136)||(33370845-33370909)
[»] chr8 (15 HSPs)
chr8 (58-245)||(12350512-12350702)
chr8 (58-166)||(12349967-12350075)
chr8 (58-166)||(43924958-43925066)
chr8 (58-164)||(43924490-43924596)
chr8 (83-166)||(43971303-43971386)
chr8 (83-161)||(39257659-39257737)
chr8 (83-166)||(43972026-43972109)
chr8 (92-164)||(38686337-38686409)
chr8 (88-164)||(33801529-33801605)
chr8 (88-161)||(33802318-33802391)
chr8 (88-161)||(38687000-38687073)
chr8 (101-164)||(15183790-15183853)
chr8 (58-113)||(32574801-32574856)
chr8 (58-124)||(40450968-40451034)
chr8 (107-164)||(39258391-39258448)
[»] scaffold0189 (2 HSPs)
scaffold0189 (58-229)||(12739-12907)
scaffold0189 (58-166)||(12184-12292)
[»] chr3 (7 HSPs)
chr3 (58-166)||(38337417-38337525)
chr3 (58-164)||(38336944-38337048)
chr3 (92-151)||(15450259-15450318)
chr3 (58-98)||(42108370-42108410)
chr3 (87-164)||(52398970-52399047)
chr3 (83-162)||(44022031-44022110)
chr3 (72-124)||(44406941-44406993)
[»] chr5 (15 HSPs)
chr5 (58-229)||(4555269-4555437)
chr5 (85-165)||(4554684-4554764)
chr5 (83-164)||(6804775-6804856)
chr5 (72-124)||(26712370-26712422)
chr5 (72-124)||(26982108-26982160)
chr5 (58-120)||(2319266-2319328)
chr5 (58-120)||(26268344-26268406)
chr5 (72-124)||(4789534-4789586)
chr5 (72-135)||(32943531-32943594)
chr5 (58-120)||(2319953-2320015)
chr5 (58-108)||(9142047-9142097)
chr5 (65-151)||(17767546-17767632)
chr5 (58-107)||(26269020-26269069)
chr5 (65-105)||(12190159-12190199)
chr5 (72-124)||(35262466-35262518)
[»] chr2 (17 HSPs)
chr2 (58-166)||(4975696-4975804)
chr2 (58-166)||(4993604-4993712)
chr2 (83-164)||(4976447-4976528)
chr2 (83-164)||(4994354-4994435)
chr2 (83-164)||(42370892-42370973)
chr2 (72-164)||(41519867-41519959)
chr2 (74-164)||(37545692-37545782)
chr2 (88-164)||(8536828-8536904)
chr2 (58-124)||(41984727-41984793)
chr2 (92-161)||(8536171-8536240)
chr2 (83-164)||(41768685-41768766)
chr2 (95-164)||(42369680-42369749)
chr2 (72-124)||(34617667-34617719)
chr2 (72-124)||(36390971-36391023)
chr2 (58-105)||(41985893-41985940)
chr2 (58-124)||(37546546-37546612)
chr2 (83-112)||(4386202-4386231)
[»] chr6 (4 HSPs)
chr6 (65-166)||(27763420-27763521)
chr6 (58-105)||(24125972-24126019)
chr6 (58-124)||(10608301-10608368)
chr6 (58-105)||(24126719-24126766)
[»] chr7 (16 HSPs)
chr7 (83-164)||(46757449-46757530)
chr7 (58-164)||(27599211-27599317)
chr7 (58-166)||(46759202-46759310)
chr7 (58-120)||(45887279-45887341)
chr7 (87-161)||(12732276-12732350)
chr7 (58-164)||(27600037-27600143)
chr7 (58-120)||(45887966-45888028)
chr7 (65-120)||(4985380-4985435)
chr7 (65-120)||(4989478-4989533)
chr7 (58-105)||(46756270-46756317)
chr7 (65-120)||(47331939-47331994)
chr7 (58-135)||(32548644-32548721)
chr7 (83-112)||(35771253-35771282)
chr7 (59-104)||(48259820-48259865)
chr7 (72-124)||(24995866-24995918)
chr7 (72-124)||(24996665-24996717)
[»] scaffold0071 (1 HSPs)
scaffold0071 (92-151)||(11873-11932)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 11469081 - 11469268
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11469081 ggtggcgtttaatttaggaaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactc 11469180  T
Q  158 aacaccagannnnnnnnncccatattggcccaccacttgcagctgtcccaactctcttttctttctctccttatcgtttctgtctctg 245  Q
    |||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  11469181 aacaccagatttttttttttcatattggcccaccacttgcagctgtcccaactctcttttctttctctccttctcgtttctgtttctg 11469268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 14925390 - 14925222
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||||||||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  14925390 ggtggcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactc 14925291  T
Q  158 aacaccagannnnnnnnncccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 229  Q
    |||||||||          |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14925290 aacaccagattttttt---ccatattggcccaccacttgcagctgccccaactctcttttctttctctcctt 14925222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 14924674 - 14924782
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| || |  ||||||| ||| |||||||||||||||||    
T  14924674 ggtggtgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactc 14924773  T
Q  158 aacaccaga 166  Q
    |||||||||    
T  14924774 aacaccaga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 31787478 - 31787586
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||| | ||||||  || |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  31787478 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactc 31787577  T
Q  158 aacaccaga 166  Q
    |||| ||||    
T  31787578 aacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 11469806 - 11469705
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||| || ||||||||  |||||||| ||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  11469806 tttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacacca 11469707  T
Q  165 ga 166  Q
    ||    
T  11469706 ga 11469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 31788299 - 31788216
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacaccaga 166  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||  ||||||| ||||||||| ||||||||||||||||||||    
T  31788299 agttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 7463444 - 7463521
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||||||||||||||||||||||||||| |  || |||| | | |||||||||||||  |||||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagaccatcaacacca 7463521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 11426882 - 11426959
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||||||||||||||||||||||||||| |  || |||| | | |||||||||||||  |||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagaccatcaacacca 11426959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 37889908 - 37889974
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagac 153  Q
    |||||||||||||||||||| ||||||||||||||||| |  || |||| | | |||||||||||||    
T  37889908 gtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 38618260 - 38618334
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacac 162  Q
    |||||||||||||||||| ||| |||||||||||||| | |||| ||| | | | ||||||||||| ||||||||    
T  38618260 tttcccaccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctcaacac 38618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 7464089 - 7464012
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||||||| |||||||||||||| |||| |  ||||||| | |  ||||||||||||  |||||||||    
T  7464089 gtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacacca 7464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 11031431 - 11031497
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| |||||  ||||||| || | | ||||||||||||||||||| ||| ||||||||||||||    
T  11031431 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccattagat 11031497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 29334238 - 29334306
Alignment:
Q  82 tagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcata 150  Q
    ||||||||||||||||||||||||  ||||||  ||||||||| |  || |||  ||||||||||||||    
T  29334238 tagttgtttcccaccatgggaaagtaaattttacccattagatcaaataaagaccatacttttatcata 29334306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 6246784 - 6246971
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6246784 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactc 6246883  T
Q  158 aacaccagannnnnnnnncccatattggcccaccacttgcagctgtcccaactctcttttctttctctccttatcgtttctgtctctg 245  Q
    |||| ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6246884 aacatcattttttttttttccatattggcccaccacttgcagctgtcccaactctcttttctttctctccttctcgtttctgtttctg 6246971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 6247519 - 6247410
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatac-ttttatcatagacact 156  Q
    ||||||||||||||||||||| || ||||||||| || ||||||||| |||||||||| |||||||||| |||||||| |||| ||||||||||||||||    
T  6247519 ggtggcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacact 6247420  T
Q  157 caacaccaga 166  Q
    ||||||||||    
T  6247419 caacaccaga 6247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 10421624 - 10421521
Alignment:
Q  63 cgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacac 162  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||| |  ||||||| ||| ||||||||||||||||||||||    
T  10421624 cgtttaatttgggaaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacac 10421525  T
Q  163 caga 166  Q
    ||||    
T  10421524 caga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 10420965 - 10421085
Alignment:
Q  106 ctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacaccagannnnnnnnncccatattggcccaccacttgcagctgtcc 205  Q
    |||||||||||||||||||||  |||| || ||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||| ||    
T  10420965 ctaattttgaccattagataaactagataacatacttttatcatagacactcaacaccagattttttt---ccatattgacccaccacttgcagctgccc 10421061  T
Q  206 caactctcttttctttctctcctt 229  Q
    ||||||||||||||||||||||||    
T  10421062 caactctcttttctttctctcctt 10421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 15481035 - 15481141
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||| ||||||||||||| || || |||||||||||  |||||||||||||||||||||| |||||| |  ||||||| ||| ||||||||||||| |||    
T  15481035 ggtgacgtttaatttggggaagggaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctc 15481134  T
Q  158 aacacca 164  Q
    |||||||    
T  15481135 aacacca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 15481614 - 15481510
Alignment:
Q  62 gcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    |||||||||||| |||| || ||||||||||||| |||||||| ||||||||||||  ||||| |  ||||||| ||| |||||||||||| ||||||||    
T  15481614 gcgtttaatttgcgaaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaaca 15481515  T
Q  162 ccaga 166  Q
    |||||    
T  15481514 ccaga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 50710435 - 50710359
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||||||||||||||  ||| ||||||||||||||| |||||||| ||   |||||||||||||||||||||||    
T  50710435 tttcccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 30808621 - 30808724
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||||  ||||||| |  ||||||||||||||||||||||| ||| |||||||||||||| | |||  ||||| | | |||||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaatacattcttatcatagacactc 30808720  T
Q  158 aaca 161  Q
    ||||    
T  30808721 aaca 30808724  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 53664242 - 53664315
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    ||||||||||||||||||  ||| |||||||||||||||  ||||||| ||  |||||||||||||||||||||    
T  53664242 tttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 45331501 - 45331395
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||||  || |||| || ||||||||||||||||| ||||| ||| |||||||||||||| | |||  ||| | | | |||||||||||||||    
T  45331501 ggtggcatttaaaatgagaaaggggagttgtttcccaccatgagaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactc 45331402  T
Q  158 aacacca 164  Q
    |||||||    
T  45331401 aacacca 45331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 25370507 - 25370572
Alignment:
Q  59 gtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||| |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattagat 25370572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 232097 - 232029
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataa 126  Q
    ||||| ||||| | ||||||| || |||||||||||||||||||||||  |||||| ||||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataa 232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 45330579 - 45330671
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||| || |||||||||||||||||| |||| ||| |||||||| ||||| | |||  ||||| | | ||||||||||| ||||||||||    
T  45330579 tgggaaaggggagttgtttcccaccatggaaaagttaaatttgaccactagattaagtaatgaatacattcttatcatagactctcaacacca 45330671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 50709713 - 50709765
Alignment:
Q  112 ttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  50709713 ttgactattagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 30809553 - 30809447
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||||  ||||||| || |||||||| |||||||| ||||| ||| |||||||| ||||| | |||  ||| | | ||||||||||||| |||    
T  30809553 ggtggcatttaaaatgggaaaggggagttgttttccaccatgagaaagttaaatttgaccactagattaagtaatgaacacatttttatcatagactctc 30809454  T
Q  158 aacacca 164  Q
    |||||||    
T  30809453 aacacca 30809447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 11680282 - 11680343
Alignment:
Q  64 gtttaatttgggaaaaggtagttgtttcccaccatgggaaagcta-attttgaccattagat 124  Q
    ||||||||||||||| | ||||| |||||||||||||||||| ||  |||||||||||||||    
T  11680282 gtttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagat 11680343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 11688561 - 11688622
Alignment:
Q  64 gtttaatttgggaaaaggtagttgtttcccaccatgggaaagcta-attttgaccattagat 124  Q
    ||||||||||||||| | ||||| |||||||||||||||||| ||  |||||||||||||||    
T  11688561 gtttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagat 11688622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 47377639 - 47377599
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  47377639 tttaatttgggaaaggggagttgtttcccaccatgggaaag 47377599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 53665104 - 53665028
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||   ||||  ||| |||||||||| |||| |||||||| ||  ||||||||||||||||||||||||    
T  53665104 tttcccaccataaaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 53665028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 6680361 - 6680286
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacac 162  Q
    ||||| |||||||||||||  ||| ||||||||||||| | ||| |||| ||| ||||||||||||  ||||||||    
T  6680361 gtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacac 6680286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 12590251 - 12590184
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagcta-attttgaccattagat 124  Q
    ||||| ||||||||||||||| | ||||| ||| |||||||||||||| ||  |||||||||||||||    
T  12590251 ggtggggtttaatttgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagat 12590184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 13868335 - 13868374
Alignment:
Q  85 ttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  13868335 ttgtttcccaccatcggaaagctaatcttgaccattagat 13868374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 25655687 - 25655620
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagcta-attttgaccattagat 124  Q
    ||||| |||||||||||||||   ||||| |||||||||||||||||| ||  |||||||||||||||    
T  25655687 ggtggggtttaatttgggaaagactagttttttcccaccatgggaaagttagtttttgaccattagat 25655620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 33369923 - 33369986
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaa 135  Q
    ||||||| | || ||||||||||||||||||||| |||| ||  ||||||||| ||||||||||    
T  33369923 tgggaaatgatatttgtttcccaccatgggaaagttaatgttagccattagatcaggtagagaa 33369986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 47376852 - 47376899
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    |||||| |||||||||||||| || |||||||||||| ||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaag 47376899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 11681322 - 11681256
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| |||||||||| |||   ||||| ||||||||||||||||||| |||||  ||||||||||    
T  11681322 ggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagat 11681256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 11689601 - 11689535
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| |||||||||| |||   ||||| ||||||||||||||||||| |||||  ||||||||||    
T  11689601 ggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagat 11689535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  112 ttgaccattagataaggtagagaatatacttttatcatagaca 154  Q
    ||||||||||||||| |||||||| |||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 38014970 - 38014904
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||| |||||||||||||||| | ||||| || ||||||||||||||| |  |||||||| ||||||    
T  38014970 ggtgccgtttaatttgggaaaggctagtttttccccaccatgggaaaggtttttttgaccgttagat 38014904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 46765216 - 46765150
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| ||||||||||||||   ||||| ||||||||||||||||||| | |||  ||||||||||    
T  46765216 ggtggcatttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagat 46765150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 33370909 - 33370845
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaat 136  Q
    ||||||| | || ||||||||||||||||||||| |||| ||  ||||||||| | |||||||||    
T  33370909 tgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaat 33370845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 12350702 - 12350512
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||||||||||||| || | |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12350702 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactc 12350603  T
Q  158 aacaccaga---nnnnnnnnncccatattggcccaccacttgcagctgtcccaactctcttttctttctctccttatcgtttctgtctctg 245  Q
    |||||||||             |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||    
T  12350602 aacaccagatttttttttttatccatattggcccaccacttgtagctgtcccaactctcttttctttctctccttctcatttctgtttctg 12350512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 12349967 - 12350075
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||| |||||||| |||||||||||| ||| |||| || ||||||||||||||||||    
T  12349967 ggtggcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactc 12350066  T
Q  158 aacaccaga 166  Q
    |||||||||    
T  12350067 aacaccaga 12350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 43925066 - 43924958
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||| |||||| |  ||||||| ||| |||||||||||||||||    
T  43925066 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactc 43924967  T
Q  158 aacaccaga 166  Q
    |||||||||    
T  43924966 aacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 43924490 - 43924596
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| |  ||||||| ||| |||||||||| ||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactc 43924589  T
Q  158 aacacca 164  Q
    |||||||    
T  43924590 aacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 43971303 - 43971386
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacaccaga 166  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||| ||||    
T  43971303 agttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 39257659 - 39257737
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||    
T  39257659 agttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 43972109 - 43972026
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacaccaga 166  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||  ||||||| ||||||||| ||||||||||||||||||||    
T  43972109 agttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 38686337 - 38686409
Alignment:
Q  92 ccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||||||||||  ||| ||||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  38686337 ccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 33801529 - 33801605
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||||||||| ||||  ||| |||||||||| |||| |||||||| ||  ||||||||||||||||||||||||    
T  33801529 tttcccaccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 33801605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 33802391 - 33802318
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    ||||||||||||||||||  ||| |||||||||| ||||  ||||||| ||  |||||||||||||||||||||    
T  33802391 tttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 38687073 - 38687000
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    |||||||| |||||||||  ||| |||| |||||||||| |||||||| ||  |||||||||||||||||||||    
T  38687073 tttcccacaatgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 15183853 - 15183790
Alignment:
Q  101 gaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||| |||||||||||||||||||| ||||| || ||  |||||||| |||||||||| ||||    
T  15183853 gaaagttaattttgaccattagataaagtagaaaacatgattttatcacagacactcaaaacca 15183790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 32574856 - 32574801
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaatttt 113  Q
    ||||||||||||| ||||||   | |||||||||||||||||| ||||||||||||    
T  32574856 ggtggcgtttaatatgggaatgagaagttgtttcccaccatggtaaagctaatttt 32574801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 40451034 - 40450968
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||| ||||| | ||||||| |  |||||||||||||||||||||||  |||||| ||||||||||    
T  40451034 ggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaagtaaattttaaccattagat 40450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 39258448 - 39258391
Alignment:
Q  107 taattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||| ||||||||||||  || |||| ||||||||| | ||||||||||||||||    
T  39258448 taattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 12907 - 12739
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  12907 ggtggcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactc 12808  T
Q  158 aacaccagannnnnnnnncccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 229  Q
    |||||||            |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12807 aacacca---tttttttttccatattggcccaccacttgcagctgccccaactctcttttctttctctcctt 12739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 12184 - 12292
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||||||||||||||||||  | ||||||||||||||||| ||||  ||||||||||| |||||| |  ||||||| ||| |||||||||||||||||    
T  12184 ggtggcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactc 12283  T
Q  158 aacaccaga 166  Q
    |||| ||||    
T  12284 aacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 38337525 - 38337417
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| |  ||||||| ||| |||||||||||||||||    
T  38337525 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactc 38337426  T
Q  158 aacaccaga 166  Q
    |||||||||    
T  38337425 aacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 38336944 - 38337048
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||| |  ||||||| ||| |||||||  ||||||||    
T  38336944 ggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactc 38337041  T
Q  158 aacacca 164  Q
    |||||||    
T  38337042 aacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 15450259 - 15450318
Alignment:
Q  92 ccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatag 151  Q
    |||||||||||||| |||| ||||||||||||| | |||||||| ||| |||||||||||    
T  15450259 ccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 42108370 - 42108410
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccat 98  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  42108370 ggtggcgtttaatttgggaaagggaagttgtttcccaccat 42108410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 52399047 - 52398970
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||| ||||||||||  ||||||||||||||||| |  ||||||||| | |||||| |||| | | ||||||||    
T  52399047 gtttcccatcatgggaaagtaaattttgaccattagattaaatagagaatacatttttatgatagtctcccaacacca 52398970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 44022110 - 44022031
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagat-aaggtagagaatatacttttatcatagacactcaacac 162  Q
    |||||||| |||||||||||||   || |||||||||||||| ||  ||| ||| |||||||||||||| |||||||||||    
T  44022110 agttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 44406993 - 44406941
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| || ||||||||||||||||||||||||  ||||||  |||||||||    
T  44406993 tgggaatagatagttgtttcccaccatgggaaagtaaattttacccattagat 44406941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 4555437 - 4555269
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||| | ||||||| || |||||||||| |||||||||||||||||||||| | || ||||| || ||||| ||||||||||| |||||||||    
T  4555437 ggtggcatttagtatgggaaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactc 4555338  T
Q  158 aacaccagannnnnnnnncccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 229  Q
    |||||||            ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  4555337 aacacca---attttttttccatattggcccaccgcttgcagctgtcccaactctcttttatttctttcctt 4555269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 4554684 - 4554764
Alignment:
Q  85 ttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacaccag 165  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  4554684 ttgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 6804856 - 6804775
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||| |||| | |   ||||||||| | ||||||||||    
T  6804856 agttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacacca 6804775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 26712422 - 26712370
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||| ||||    
T  26712422 tgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagat 26712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 26982160 - 26982108
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||| ||||    
T  26982160 tgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagat 26982108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 2319266 - 2319328
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||| |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||    
T  2319266 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccatt 2319328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 26268344 - 26268406
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||| |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||    
T  26268344 ggtggcatttaatttgggaaatgttagttttttcccaccatgggaaagctttttctgaccatt 26268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 4789534 - 4789586
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| || ||||||||||||||||||||||| || | |||||||||||||    
T  4789534 tgggaaaggggagttgtttcccaccatgggaaagttattcttgaccattagat 4789586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 32943531 - 32943594
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaa 135  Q
    ||||||| | || ||||||||||||||||||||| |||| ||  ||||||||| ||||||||||    
T  32943531 tgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggtagagaa 32943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 2320015 - 2319953
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||| |||||||||||||| | ||||| ||||||||||| ||||||||  || ||||||||    
T  2320015 ggtggcatttaatttgggaaaggctagttttttcccaccataggaaagctttttctgaccatt 2319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 9142047 - 9142097
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagcta 108  Q
    |||||| |||| | ||||||| || ||||||||||||||||||||||||||    
T  9142047 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagcta 9142097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 17767632 - 17767546
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatag 151  Q
    |||||| ||||||| | | ||||||||||||||||||||||   |||| ||||||||||| |  || |||| ||| |||||||||||    
T  17767632 tttaatatgggaaaggatcgttgtttcccaccatgggaaagtagatttagaccattagattaactaaagaacatatttttatcatag 17767546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 26269069 - 26269020
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagct 107  Q
    |||||| |||||||||||||| | ||||| ||||||| ||||||||||||    
T  26269069 ggtggcatttaatttgggaaaggttagttttttcccatcatgggaaagct 26269020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 12190199 - 12190159
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
T  12190199 tttaatttgggaaaagagagttttttcccaccatgggaaag 12190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 35262466 - 35262518
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| | || |||||||| |||||||||||| || |||||||||||||||    
T  35262466 tgggaaaggataattgtttcctaccatgggaaagttatttttgaccattagat 35262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 4975696 - 4975804
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||| | ||||||  || |||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||    
T  4975696 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4975795  T
Q  158 aacaccaga 166  Q
    |||| ||||    
T  4975796 aacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 4993604 - 4993712
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    ||||||||||| | ||||||  || |||||||| ||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||    
T  4993604 ggtggcgtttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4993703  T
Q  158 aacaccaga 166  Q
    |||| ||||    
T  4993704 aacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 4976528 - 4976447
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||  ||||||| ||||||||| ||||||||||||||||||    
T  4976528 agttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 4994435 - 4994354
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||  ||||||| ||||||||| ||||||||||||||||||    
T  4994435 agttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 42370973 - 42370892
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||| || ||||||||| ||||||||||||||||| ||||||    
T  42370973 agttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacactcgacacca 42370892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 41519959 - 41519867
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||| || |||| |||||||||||||||||| |  |||||||| ||| |||| |||||||| ||||||||| ||||||||| ||||||||    
T  41519959 tgggaaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 37545692 - 37545782
Alignment:
Q  74 ggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||| || ||||||||||||||||||||||| ||| |||||||||||||| | |||  ||| | | | ||||||||||||||||||||||    
T  37545692 ggaaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 8536904 - 8536828
Alignment:
Q  88 tttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||| ||||||| ||||  ||| ||||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  8536904 tttcctaccatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 41984727 - 41984793
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| |||||||||||||| | ||||| |||| |||||||||||||||| || ||||||||||||    
T  41984727 ggtggcatttaatttgggaaaggctagttttttctcaccatgggaaagctatttctgaccattagat 41984793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 8536171 - 8536240
Alignment:
Q  92 ccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    ||||||||||||||  ||| ||||| ||||||||| |||||||| ||  |||||||||||||||||||||    
T  8536171 ccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 41768766 - 41768685
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||| |||| | |   ||||||||| | ||||||||||    
T  41768766 agttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacacca 41768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 42369680 - 42369749
Alignment:
Q  95 ccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||||||  ||| ||  ||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  42369680 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 34617667 - 34617719
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| | || ||||||||||||||||||||| || |||||||||||||||    
T  34617667 tgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagat 34617719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 36390971 - 36391023
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| || |||||||||||||||||||||||  |||||| ||||||||||    
T  36390971 tgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagat 36391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 41985940 - 41985893
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    ||||||||||||||||||||| || |||||||| |||||||| |||||    
T  41985940 ggtggcgtttaatttgggaaagggaagttgttttccaccatgagaaag 41985893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 37546612 - 37546546
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    |||||| |||||  ||||||| || |||||||||||| |||||||||| ||| |||||||| |||||    
T  37546612 ggtggcatttaaaatgggaaaggggagttgtttcccatcatgggaaagttaaatttgaccactagat 37546546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 4386231 - 4386202
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattt 112  Q
    ||||||||||||||||||||||||||||||    
T  4386231 agttgtttcccaccatgggaaagctaattt 4386202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 27763420 - 27763521
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    ||||||||||| || || ||||||||||||||| |||||| |||||||||||| |||||| |  ||||||| ||| |||||||| |||||||||||||||    
T  27763420 tttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacacca 27763519  T
Q  165 ga 166  Q
    ||    
T  27763520 ga 27763521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 24125972 - 24126019
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    |||||| |||||||||||||| || |||||||||||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaag 24126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 10608368 - 10608301
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagcta-attttgaccattagat 124  Q
    ||||| ||||||||||||||| | | ||| |||||||||||||||||| ||  |||||||||||||||    
T  10608368 ggtggggtttaatttgggaaaggctggttttttcccaccatgggaaagttagtttttgaccattagat 10608301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 24126766 - 24126719
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    |||||| |||||||||||||| || |||||||||||| ||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaag 24126719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaacacca 164  Q
    |||||||| |||||||| |||||  ||| ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 27599211 - 27599317
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||||  ||||||| || ||||||||||||||||||||||| ||| |||||||||||||| | |||  ||| | | | |||||||||||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactc 27599310  T
Q  158 aacacca 164  Q
    |||||||    
T  27599311 aacacca 27599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 46759310 - 46759202
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||| | ||||||| || |||||||||||| ||| | ||||||||| ||||||||||||||| |||||||| |||||| ||| ||| | |||     
T  46759310 ggtggcatttagtatgggaaaggggagttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatactt 46759211  T
Q  158 aacaccaga 166  Q
    |||||||||    
T  46759210 aacaccaga 46759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 45887279 - 45887341
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||||    
T  45887279 ggtggcgtttaatttgggaaaggctagttttttcccaccatgggaaagctttttttgaccatt 45887341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 12732276 - 12732350
Alignment:
Q  87 gtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactcaaca 161  Q
    |||||||||||||||||||  ||| ||||||||||||| | ||| |||| ||| ||||||||||||| |||||||    
T  12732276 gtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 27600143 - 27600037
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatagacactc 157  Q
    |||||| |||||  ||||||| || ||||||||||||||||||||||| ||| |||||||| ||||| | |||  ||| | | | ||||||||||| |||    
T  27600143 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactctc 27600044  T
Q  158 aacacca 164  Q
    |||||||    
T  27600043 aacacca 27600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 45888028 - 45887966
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||| |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||    
T  45888028 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccatt 45887966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 4985435 - 4985380
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||    
T  4985435 tttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccatt 4985380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 4989533 - 4989478
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||    
T  4989533 tttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccatt 4989478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 46756270 - 46756317
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaag 105  Q
    ||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  46756270 ggtggcgtttaatttgggaaagggaagttgttttccaccatggaaaag 46756317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 47331994 - 47331939
Alignment:
Q  65 tttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccatt 120  Q
    |||||||||||||| | ||||| ||||||||||||||||||||  || ||||||||    
T  47331994 tttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccatt 47331939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 32548721 - 32548644
Alignment:
Q  58 ggtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaa 135  Q
    ||||| ||||| | ||||||| | || ||||||||||||||||||||| |||| ||  ||||||||| | ||||||||    
T  32548721 ggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaa 32548644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 35771282 - 35771253
Alignment:
Q  83 agttgtttcccaccatgggaaagctaattt 112  Q
    ||||||||||||||||||||||||||||||    
T  35771282 agttgtttcccaccatgggaaagctaattt 35771253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 48259865 - 48259820
Alignment:
Q  59 gtggcgtttaatttgggaaaaggtagttgtttcccaccatgggaaa 104  Q
    ||||| |||||||||||||| | ||||| |||||||||||||||||    
T  48259865 gtggcatttaatttgggaaatgttagttttttcccaccatgggaaa 48259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 24995866 - 24995918
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| || |||||||||||||||||||||||    |||||||||||||||    
T  24995866 tgggaaaggggagttgtttcccaccatgggaaagtattttttgaccattagat 24995918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 24996717 - 24996665
Alignment:
Q  72 tgggaaaaggtagttgtttcccaccatgggaaagctaattttgaccattagat 124  Q
    ||||||| || |||||||||||||||||||||||    |||||||||||||||    
T  24996717 tgggaaaggggagttgtttcccaccatgggaaagtattttttgaccattagat 24996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 11932 - 11873
Alignment:
Q  92 ccaccatgggaaagctaattttgaccattagataaggtagagaatatacttttatcatag 151  Q
    |||||||||||||| |||| ||||||||||||| | |||||||| ||| |||||||||||    
T  11932 ccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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