View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_high_69 (Length: 237)
Name: NF4125_high_69
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_69 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 10150679 - 10150513
Alignment:
| Q |
12 |
caagaatataaatttgaaaagtcaagaatataaataacctcaggatggtatctgatccctcctttcataggacctctagagttatcatgttgaatcctga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
10150679 |
caagaatataaatttgaaaagtcaagaatataaataacctcaggatggtatctgatccctcctttcatagggcctctagagttatcatgttgaattctga |
10150580 |
T |
|
| Q |
112 |
atccaacataagtagccaaggttccatcatctttagggatgctacactcaacctgaatttgcattaa |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
10150579 |
atccaacatatgtagccaaggttccatcatctttagggatgctacactccacctgaattttcattaa |
10150513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 33196589 - 33196454
Alignment:
| Q |
36 |
agaatataaataacctcaggatggtatctgatccctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||| ||| || | |
|
|
| T |
33196589 |
agaatataaataacctcaggatggtatctgatccctcctttcatagggcctctagcattatcatgttgaactctgaatccaatataagattgcaacgtgc |
33196490 |
T |
|
| Q |
136 |
catcatctttagggatgctacactcaacctgaattt |
171 |
Q |
| |
|
| ||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
33196489 |
cgtcatctttaggaatggtacattcaacctgaattt |
33196454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 38823303 - 38823227
Alignment:
| Q |
69 |
cctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttccatcatcttt |
145 |
Q |
| |
|
||||||||||| ||||| | || || |||||||| ||||| || |||||||||| | |||| |||||||||||||| |
|
|
| T |
38823303 |
cctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatcttt |
38823227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 41209761 - 41209685
Alignment:
| Q |
69 |
cctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttccatcatcttt |
145 |
Q |
| |
|
||||||||||| ||||| | || || |||||||| ||||| || |||||||||| | |||| |||||||||||||| |
|
|
| T |
41209761 |
cctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatcttt |
41209685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University