View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_70 (Length: 226)
Name: NF4125_high_70
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 50508008 - 50507912
Alignment:
| Q |
86 |
ttaagttaacctcaacaatgtaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataac |
182 |
Q |
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| T |
50508008 |
ttaagttaacctcaacaatttaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcactgtgcataacatatcaatgttgaacaataac |
50507912 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 50509764 - 50509692
Alignment:
| Q |
15 |
agcagagacattgggattaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt |
87 |
Q |
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| T |
50509764 |
agcagagacattgggattaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt |
50509692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 32910916 - 32910973
Alignment:
| Q |
121 |
gtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa |
178 |
Q |
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| T |
32910916 |
gtgttgcaccatcaaataaccgtcatcgtagagttcataacatatcaatgttgaacaa |
32910973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 1848629 - 1848531
Alignment:
| Q |
86 |
ttaagttaacctcaacaatgtaaattaa------cgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa |
178 |
Q |
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| T |
1848629 |
ttaagttaacctcaacgatgtaaattaatgttaacgcatgtgtgttgcaccatcaaataaccgtcgttgtaaagggcgtaacatatcaacgttgaacaa |
1848531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 44953554 - 44953610
Alignment:
| Q |
118 |
tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttga |
174 |
Q |
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| T |
44953554 |
tgcgtgttgcaccatcaaataaccgtcgttgtaaagttcataacatatcaacgttga |
44953610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 35979616 - 35979556
Alignment:
| Q |
118 |
tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa |
178 |
Q |
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| T |
35979616 |
tgcgtgttgcaccatcaaatagccttgattgtagagttcataacatatcaacgttgaacaa |
35979556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 37544791 - 37544851
Alignment:
| Q |
118 |
tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa |
178 |
Q |
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| T |
37544791 |
tgcgtgctgcaccatcaaataaccgtcgttgtagagttcataacatatcaacgttgaacaa |
37544851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 35006196 - 35006225
Alignment:
| Q |
86 |
ttaagttaacctcaacaatgtaaattaacg |
115 |
Q |
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| T |
35006196 |
ttaagttaacctcaacaatgtaaattaacg |
35006225 |
T |
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