View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_high_8 (Length: 702)
Name: NF4125_high_8
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Complemental strand, 37875853 - 37875171
Alignment:
| Q |
1 |
ttgaagtcccatgtttgcaagcttattggttaataagctcatgctgttgtccgattttaatctgcaaagataaactacatagtcctgtcctttaatcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37875853 |
ttgaagtcccatgtttgcaagcttattggttaataagctcatgctgttgtccgattttaatctgcaaagataaactacatagtcctgtcctttaatcagc |
37875754 |
T |
|
| Q |
101 |
aagagtgagttctacactctaaattcagtggttggtccttaatgtattgttagctatttttctccaggttgttggagaccgaaaaggagcagtgtttggt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37875753 |
aagactgagttctacactctaaattcagtggttggtccttaatgtattgttagctatttttctccaggttgttggagaccgaaaaggagcagtgtttggt |
37875654 |
T |
|
| Q |
201 |
ggcttggttgaagcaccccttcgaccatccaacaagagaaaataccaggtcaggttttatttttgtactttgatgctatcgtc-tttttccctttgcaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37875653 |
ggcttggttgaagcaccccttcgaccatccaacaagagaaaataccaggtcaggttctatttttgtactttgatgctatcgtcctttttccctttgcaac |
37875554 |
T |
|
| Q |
300 |
aatgttaatgtttattttatcttgttgacataaattttgtacagggaacaaacagtacatttgttttcacaaacatctctggtcatcccgtcgtatatcg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37875553 |
aatgttaatgtttattttatcttgttgacataaattttgtacagggaacaaacagtacatttgttttcacaaacatctctggtcatcccgttgtatatcg |
37875454 |
T |
|
| Q |
400 |
cccaacaggtatatctcttttttattcgagtttgaacattctagtctttatctttcttttgttttcatagttatactgtgttttgtttatataataattg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37875453 |
cccaacaggtatatctcttttttattcgagtttgaacattctaatctttatctttcttttgttttcatagttatactgtgttttgtttatataataattg |
37875354 |
T |
|
| Q |
500 |
attagtttgttatttaagtcaataacatgtattactaaatcaataacaggtaatttagttgaatgactagatcactaaatgaatattttaattttccttt |
599 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37875353 |
attagtttgttatttaagtcaattacatgtattactaaatcaataacaggtaatttagttgaatgactagatcactaaatgaatattttaatttttcttt |
37875254 |
T |
|
| Q |
600 |
tacaaaactatgtggatgaggagagaattcttcaaagttgatttgttgtgatgaaaaactatcagtttcaatgacatggtatc |
682 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37875253 |
tacaaaactatgtggatgaggagagaattcttcgaagttgatttgttgtgatgaaaaactatcagtttcaatgacatggtatc |
37875171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 311 - 411
Target Start/End: Complemental strand, 39548846 - 39548745
Alignment:
| Q |
311 |
ttattttatcttgttgaca-taaattttgtacagggaacaaacagtacatttgttttcacaaacatctctggtcatcccgtcgtatatcgcccaacaggt |
409 |
Q |
| |
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|||| |||||||||||||| || |||||||||||||||| |||||||||| ||||||| |||| |||||||||| ||| || |||||| ||||||||| |
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| T |
39548846 |
ttatattatcttgttgacagtagattttgtacagggaactaacagtacatatgttttctcaaatatctctggtcgtcctatcatatatcatccaacaggt |
39548747 |
T |
|
| Q |
410 |
at |
411 |
Q |
| |
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|| |
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|
| T |
39548746 |
at |
39548745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 39549032 - 39548946
Alignment:
| Q |
166 |
aggttgttggagaccgaaaaggagcagtgtttggtggcttggttgaagcaccccttcgaccatccaacaagagaaaataccaggtca |
252 |
Q |
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||||||||||||| |||||||||||| ||||| ||||||||||| |||| || |||||||| |||||||||||||||||||| |
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| T |
39549032 |
aggttgttggagataaaaaaggagcagtatttggcagcttggttgaaacacctctcaaaccatccagcaagagaaaataccaggtca |
39548946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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