View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_1 (Length: 919)
Name: NF4125_low_1
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 307 - 849
Target Start/End: Complemental strand, 9248281 - 9247739
Alignment:
| Q |
307 |
ctaatcatgtatgtttagtgtttgtttgtgtctctggtatagaagattctcatttatcttctcagtgttaattgtcacagcaaatttatttaactttatg |
406 |
Q |
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| T |
9248281 |
ctaatcatgtatgtttagtgtttgtttgtgtctctggtatagaagattctcatttatcttctcagtgttaattgtcacagcaaatttatttaactttatg |
9248182 |
T |
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| Q |
407 |
aatgaatgatttctttgaaattatataaagtggttgattgataccatagtttattgtacttacagtaaaatggtggaatggttaagctgatgtagatatt |
506 |
Q |
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| T |
9248181 |
aatgaatgatttctttgaaattatataaagtggttgattgataccatagtttattgtacttacagtaaaatggtagaatggttaagctgatgtagatatt |
9248082 |
T |
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| Q |
507 |
aacagggttaaatttatgtaattgaaagtatattactatgcatgcatttctttcgacaagttcatctgagtggtaaggaactcaaacaacttaagatagt |
606 |
Q |
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| T |
9248081 |
aacagggttaaatttatgtaattgaaagtatattactatgcatgcatttctttcgacaagttcatctgagtggtaaggaactcaaacaacttaagatagt |
9247982 |
T |
|
| Q |
607 |
ggttagaggtgaaaatcctgactcttatttatagaaaacactgttaaacggagatcagacgctgttaagcggcagtagatagtttgtacctggaatctgg |
706 |
Q |
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| T |
9247981 |
ggttagaggtgaaaatcctgactcttatttatagaaaacactgttaaacggagatcagacgctgttaagcggcagtagatagtttgtacctggaatctgg |
9247882 |
T |
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| Q |
707 |
ttaccgaaaaacaatgtttgcaattccaacttaaaatacaatgcaaggttttcattacatgcattttgcaacataagaagaaacaaaattagtttgtcag |
806 |
Q |
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| T |
9247881 |
ttactgaaaaacaatgtttgcaattccaacttaaaatacaatgcaaggttttcattacatgcattttgcaacataagaagaaacaaaattagtttgtcag |
9247782 |
T |
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| Q |
807 |
atgtgtggctgcaatgacagattgtccttgattgatcacgagg |
849 |
Q |
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| T |
9247781 |
atgcgtggctgcaatgacagattgtccttgattgatcatgagg |
9247739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 9248577 - 9248518
Alignment:
| Q |
18 |
cctacaagggtacctagtgccaggtcaattttttatatctctattgttcttagaacatga |
77 |
Q |
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| T |
9248577 |
cctacaagggtacctagtgccaggtcaattttttatatctctattgttcttagaacatga |
9248518 |
T |
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