View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_11 (Length: 669)
Name: NF4125_low_11
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 27 - 588
Target Start/End: Original strand, 30515785 - 30516345
Alignment:
| Q |
27 |
tttaattaagcccagtttgagaaagacaacgagatgaaagtatgcaataatggagttcccagacttgtcctttgctttgcccccactactccacaatcac |
126 |
Q |
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| T |
30515785 |
tttaattaagcccagtttgagaaagacaacgagatgaaagtatgcaataatggagttcccaaacttgtcctttgctttgcccccactactccacaatcac |
30515884 |
T |
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| Q |
127 |
attcctttatnnnnnnn-ttaaaataaagacaccattttttaaaagggatcagctttcagcattcaaaagaatatgcatggatctctctccctttccttt |
225 |
Q |
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| T |
30515885 |
attcctttataaaaaaaattaaaataaagacaccattttttaaaagggatcagctttcagcattcaaaagaatatgcatggatctctctccctttccttt |
30515984 |
T |
|
| Q |
226 |
aagcccttcaatatttttctaacaacaaacttttcagcctccatcaagcactcaattaccaccttttcctccttgcaaagttttcagatacttaataatt |
325 |
Q |
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| T |
30515985 |
aagcccttcaatatttttctaacaacaaacttttcagcctccatcaagcactcaattaccaccttttcctccttgcaaagttttcagatacttaataatt |
30516084 |
T |
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| Q |
326 |
ctttttcctctccaacttcagtttcatttcatccaccttttctttttattcacggtggagatattagtgaacattcgattaagattagacgattctgatt |
425 |
Q |
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| T |
30516085 |
ctttttcctctccaacttcagtttcatttcatccaccttttctttttactcacggtggagatattagtggccattcgattaagattagactatcctaatt |
30516184 |
T |
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| Q |
426 |
caaatttgctaatttaaaaagaaattaaaattttgcgttttaaatggaatggttcaaattcaagtttgatattttaaatagtaaattaaaaatatgcatt |
525 |
Q |
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| T |
30516185 |
caaatttgctaatttaaaa--acattaaaattttgcattttaaattgaatggttcaaattcaagtttaatattttaaatagtaaattaaaaatatgcatt |
30516282 |
T |
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| Q |
526 |
tttggaatcataatccgaagtaaacctagatctcaatttgaaacagattgtgcatttaagatc |
588 |
Q |
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| T |
30516283 |
tttggaatcataatccgaagtaaacctagatctcaatttagaaaagattgtgcgattaagatc |
30516345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 655
Target Start/End: Original strand, 30516394 - 30516431
Alignment:
| Q |
618 |
ggatcataattaataagtgaatatatatacatgatgat |
655 |
Q |
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| T |
30516394 |
ggatcataattgataagtgaatatatatacatgatgat |
30516431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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