View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_14 (Length: 644)

Name: NF4125_low_14
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_14
NF4125_low_14
[»] chr3 (3 HSPs)
chr3 (24-629)||(32103949-32104566)
chr3 (16-130)||(32118238-32118352)
chr3 (61-130)||(32110223-32110292)
[»] chr7 (3 HSPs)
chr7 (539-607)||(37575577-37575645)
chr7 (334-448)||(35451000-35451116)
chr7 (352-419)||(25635867-25635934)
[»] chr8 (2 HSPs)
chr8 (358-417)||(13396929-13396988)
chr8 (358-417)||(13402227-13402286)
[»] chr1 (3 HSPs)
chr1 (322-383)||(26828575-26828637)
chr1 (558-600)||(47377561-47377603)
chr1 (351-383)||(32617570-32617602)
[»] chr2 (2 HSPs)
chr2 (537-582)||(4374040-4374085)
chr2 (332-382)||(42237561-42237612)
[»] chr6 (1 HSPs)
chr6 (325-372)||(6134223-6134271)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 24 - 629
Target Start/End: Complemental strand, 32104566 - 32103949
Alignment:
Q  24 atagtgttttggttatgttgattgaattgatattggatttttgtaggagctttatgttcacattggatggcctttgtatcgcaaatatggtcatgctttt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32104566 atagtgttttggttatgttgattgaattgatattggatttttgtaggagctttatgttcacattggatggcctttgtatcgcaaatatggtcatgctttt 32104467  T
Q  124 gaggtaacatcttctcttaacactctttgatggtttcttgctaggttctaaaaatggtcgatgccaccgtgaaaacggctgaaaccaaaatggcattggt 223  Q
    ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  32104466 gaggtaacatcttctcttaacactct-----ggtttcttgctaggttctaaaaatggtcgatgccaccgtgaaaatggctgaaaccaaaattgcattggt 32104372  T
Q  224 atcgtagatattgtttttctccatatcaac---------aaaacagacttataatttgggacaannnnnnnct--tttcaaatagacttataa-ttggtt 311  Q
    || ||||||||||||||||||| | | |||         |||||||||||||||||||||||||       ||  |||||||||||||||||| |||| |    
T  32104371 attgtagatattgtttttctccgttttaacctagtgaacaaaacagacttataatttgggacaatttttttctcttttcaaatagacttataatttggat 32104272  T
Q  312 t----ggaggcagaatatgatagcataaataattttaataa-gtttgtgccatgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaa 406  Q
    |    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  32104271 tggagggaggcagtatatgatagcataaataattttaataacgtttgtgccatgttgtgattaatttacaccgcgactacaacaatccgtaatagctgaa 32104172  T
Q  407 atcacaaaatccttacgcaacctcgagcactatttaaaacctctgttccttgactttttatttgtagtcaggggcgaatgcattatatggcttgttgtgg 506  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32104171 atcacaaaatccttacacaacctcgagcactatttaaaacctctgttccttgactttttatttgtagtcaggggcgaatgcattatatggcttggtgtgg 32104072  T
Q  507 ctataaacataccaaaatttccccagaaattatttacatatgaaggatggttataaaaatgaaatgtttgaagaagttcatggctcattttgtttcaatt 606  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32104071 ctataaacatatcaaaatttccccagaaattatttacatatgaaggatgtctataaaaatgaaatgtttgaagaagttcatggctcattttgtttcaatt 32103972  T
Q  607 agcaaattttagtgtgacaaatg 629  Q
    |||||||||||||||||||||||    
T  32103971 agcaaattttagtgtgacaaatg 32103949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 32118352 - 32118238
Alignment:
Q  16 ttttgtttatagtgttttggttatgttgattgaattgatattggatttttgtaggagctttatgttcacattggatggcctttgtatcgcaaatatggtc 115  Q
    ||||||||||||||||||||||||||| |||||||| ||  | | | | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32118352 ttttgtttatagtgttttggttatgttaattgaattcattgttgttatctgtaggatctttatgttcacattggatggcctttgtatcgcaaatatggtc 32118253  T
Q  116 atgcttttgaggtaa 130  Q
    |||||||||||||||    
T  32118252 atgcttttgaggtaa 32118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 32110292 - 32110223
Alignment:
Q  61 tttttgtaggagctttatgttcacattggatggcctttgtatcgcaaatatggtcatgcttttgaggtaa 130  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32110292 tttttgtaggatctttatgtacacattggatggcctttgtatcgcaaatatggccatgcttttgaggtaa 32110223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 539 - 607
Target Start/End: Complemental strand, 37575645 - 37575577
Alignment:
Q  539 tttacatatgaaggatggttataaaaatgaaatgtttgaagaagttcatggctcattttgtttcaatta 607  Q
    |||||||||||| |||| || ||||||||||||||| |||||||||  ||||| |||||||||||||||    
T  37575645 tttacatatgaaagatgtttttaaaaatgaaatgttagaagaagttggtggcttattttgtttcaatta 37575577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 448
Target Start/End: Complemental strand, 35451116 - 35451000
Alignment:
Q  334 aaataattttaataagttt-gtgccatgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaatcacaaaatcctt-acgcaacctcg 431  Q
    |||||||||||||||  || || | ||||||||||||||| ||||||| ||     |||||||||||| | ||||||||||||| ||| |||| ||||||    
T  35451116 aaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattcttaacgcgacctcg 35451017  T
Q  432 agcactatttaaaacct 448  Q
    |||  ||||||||||||    
T  35451016 agcgttatttaaaacct 35451000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 25635934 - 25635867
Alignment:
Q  352 tgtgccatgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaatcacaaaatcct 419  Q
    ||||| ||||||||||||||| ||||||| ||  |  |||||||||||||| |||||| |||||||||    
T  25635934 tgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaatcct 25635867  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 13396929 - 13396988
Alignment:
Q  358 atgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaatcacaaaatc 417  Q
    ||||||||||||||| |||||||||| ||  |||||| |||||||||||||| |||||||    
T  13396929 atgttgtgattaattcacaccgcgacagccgcaatccataacagctgaaatcgcaaaatc 13396988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 13402227 - 13402286
Alignment:
Q  358 atgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaatcacaaaatc 417  Q
    ||||||||||||||| ||||||||||  |  ||||||||||||||||||||||| |||||    
T  13402227 atgttgtgattaattcacaccgcgacaaccgcaatccgtaacagctgaaatcacgaaatc 13402286  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 26828575 - 26828637
Alignment:
Q  322 atatgatagcataaataattttaataag-tttgtgccatgttgtgattaatttacaccgcgac 383  Q
    ||||| ||| |||||||| ||||||||  ||||||| ||||||||||||||||||||||||||    
T  26828575 atatgttagtataaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgac 26828637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 47377561 - 47377603
Alignment:
Q  558 tataaaaatgaaatgtttgaagaagttcatggctcattttgtt 600  Q
    |||||||||||||| |||||||||||| |||||| ||||||||    
T  47377561 tataaaaatgaaatttttgaagaagttgatggcttattttgtt 47377603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 32617602 - 32617570
Alignment:
Q  351 ttgtgccatgttgtgattaatttacaccgcgac 383  Q
    |||||| ||||||||||||||||||||||||||    
T  32617602 ttgtgcaatgttgtgattaatttacaccgcgac 32617570  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 4374040 - 4374085
Alignment:
Q  537 tatttacatatgaaggatggttataaaaatgaaatgtttgaagaag 582  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||    
T  4374040 tatttacatatgaaggatgtctataaaaatgaaatgttagaagaag 4374085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 42237612 - 42237561
Alignment:
Q  332 ataaataattttaataag-tttgtgccatgttgtgattaatttacaccgcga 382  Q
    |||||||||||||||||| ||||||| |||||||| |||||| |||||||||    
T  42237612 ataaataattttaataagatttgtgcaatgttgtggttaattcacaccgcga 42237561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 6134271 - 6134223
Alignment:
Q  325 tgatagcataaataattttaataag-tttgtgccatgttgtgattaatt 372  Q
    |||||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  6134271 tgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 6134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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