View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_15 (Length: 638)
Name: NF4125_low_15
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 34667432 - 34666806
Alignment:
| Q |
1 |
gtttaatgcagttgtctctggtcttgaatcttccgaccctgattatgagtttccgaaatatgaaattaaagaggtaannnnnnnattaatttttctctga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34667432 |
gtttaatgcagttgtctctggtcttgaatcttccgaccctgattatgagtttccgaaatatgaaattaaagaggtaatttttttattaatttttctctga |
34667333 |
T |
|
| Q |
101 |
aaaaactttcttgaatttccttgatgccatatgcgtaggattcacatatttttctgtgcaggaaatggaaaacttgttgcagtgttccctctgtggaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34667332 |
aaaaactttcttgaatttccttgatgccatatgcgtaggattcacatatttttctgtgcaggaaatggaaaacttgttgcagtgttccctctgtggaaaa |
34667233 |
T |
|
| Q |
201 |
tacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctccttcctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34667232 |
tacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctccttcctg |
34667133 |
T |
|
| Q |
301 |
gaccaaacataattgaactccataagaggtttaaaacttttctttgttttaatttgttactctggtttcaatgtcataatttatcattttatgacaacaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34667132 |
gaccaaacataattgaactccataagaggtttaaaacttttatttgttttaatttgttactctggtttcaatgtcataatttatcattttatgacaacaa |
34667033 |
T |
|
| Q |
401 |
caatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggcacaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34667032 |
caatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggcacaaaa |
34666933 |
T |
|
| Q |
501 |
tattagagaggatttgtgctttggatcttccaaacaatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttcttctt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666932 |
tattagagaggatttgtgctttggatcttccaaaaaatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttcttctt |
34666833 |
T |
|
| Q |
601 |
taatggtaccttcccttaacgattctt |
627 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
34666832 |
taatggtaccttcccttaacgattctt |
34666806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 26961232 - 26960606
Alignment:
| Q |
1 |
gtttaatgcagttgtctctggtcttgaatcttccgaccctgattatgagtttccgaaatatgaaattaaagaggtaannnnnnnattaatttttctctga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26961232 |
gtttaatgcagttgtctctggtcttgaatcttccgaccctgattatgagtttccgaaatatgaaattaaagaggtaatttttttattaatttttctctga |
26961133 |
T |
|
| Q |
101 |
aaaaactttcttgaatttccttgatgccatatgcgtaggattcacatatttttctgtgcaggaaatggaaaacttgttgcagtgttccctctgtggaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26961132 |
aaaaactttcttgaatttccttgatgccatatgcgtaggattcacatatttttctgtgcaggaaatggaaaacttgttgcagtgttccctctgtggaaaa |
26961033 |
T |
|
| Q |
201 |
tacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctccttcctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26961032 |
tacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctccttcctg |
26960933 |
T |
|
| Q |
301 |
gaccaaacataattgaactccataagaggtttaaaacttttctttgttttaatttgttactctggtttcaatgtcataatttatcattttatgacaacaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26960932 |
gaccaaacataattgaactccataagaggtttaaaacttttatttgttttaatttgttactctggtttcaatgtcataatttatcattttatgacaacaa |
26960833 |
T |
|
| Q |
401 |
caatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggcacaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26960832 |
caatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggcacaaaa |
26960733 |
T |
|
| Q |
501 |
tattagagaggatttgtgctttggatcttccaaacaatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttcttctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26960732 |
tattagagaggatttgtgctttggatcttccaaataatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttcttctt |
26960633 |
T |
|
| Q |
601 |
taatggtaccttcccttaacgattctt |
627 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26960632 |
taatggtaccttcccttaacgattctt |
26960606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 93 - 393
Target Start/End: Complemental strand, 26848821 - 26848515
Alignment:
| Q |
93 |
ttctctgaaaaaactttcttgaatttccttgatgccatatgcgtaggattcacatatttttctgtgcaggaaatggaaaacttgttgcagtgttccctct |
192 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| || |
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|
| T |
26848821 |
ttctctgaaaaaactttcttgaattgccttgatgccatatgtgtaggattcacatatttttctgtacaggaaagggacaacttgttgcagtgttcccact |
26848722 |
T |
|
| Q |
193 |
gtggaaaatacgctcatcaatca---ttcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaata |
289 |
Q |
| |
|
||||||||||||||||||| ||| || || || |||||| | ||||||||||||||| ||||||| ||||||||||||||||||| || | || || |
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|
| T |
26848721 |
gtggaaaatacgctcatcactcatgcttggtgccaccaattagcgattttgttcttgaggaatgggcatgtgatttgtgcaaggatacaaccgtaaacta |
26848622 |
T |
|
| Q |
290 |
tctccttcctggaccaaacataattgaactccataagaggtttaaaactt-----ttctttgttttaatttgttactctggtttcaatgtcataatttat |
384 |
Q |
| |
|
||||| ||||||| || | |||||||||||||| || ||| ||||||||| | ||| |||||||||| ||||||||||||||||||| |||||| |
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|
| T |
26848621 |
tctccctcctggaacagatataattgaactccagaaaagg-ttaaaacttgtataattttttttttaatttggcactctggtttcaatgtcat-atttat |
26848524 |
T |
|
| Q |
385 |
cattttatg |
393 |
Q |
| |
|
||||||||| |
|
|
| T |
26848523 |
cattttatg |
26848515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 427 - 605
Target Start/End: Complemental strand, 26848441 - 26848262
Alignment:
| Q |
427 |
aagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggcacaaaatattagagaggatttgtgctttggat |
526 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||| ||| || ||||||||||||||| ||| | | | || |||||||||| |||||||||||||||| |
|
|
| T |
26848441 |
aagagtatgacagtgatgaatattttcgtgggattgctgtaggtatgacacagccatggagtgcaagaaaaatatattagagatgatttgtgctttggat |
26848342 |
T |
|
| Q |
527 |
cttccaaacaatccgttggatgatattattgaccaggtaa-tgattatttgtttattcatccccgtcttcttctttaatg |
605 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| |||| ||| ||| |||||||| | | ||| ||||||||| |
|
|
| T |
26848341 |
cttccaaacaatcccttggatgatattattgatcaggtaattgatcattcgttgattcatcctcattttcctctttaatg |
26848262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26848923 - 26848854
Alignment:
| Q |
1 |
gtttaatgcagttgtctctggtcttgaatcttccgaccctgattat---gagtttccgaaatatgaaatt |
67 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
26848923 |
gtttgatgcagctgcctctggtcttgaatcttccgactctgattatgaggagtttcagaaatgtgaaatt |
26848854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 570
Target Start/End: Complemental strand, 18462651 - 18462578
Alignment:
| Q |
497 |
aaaatattagagaggatttgtgctttggatcttccaaacaatccgttggatgatattattgaccaggtaatgat |
570 |
Q |
| |
|
||||||||||||| ||| || | |||||||||||||| ||||| |||||||| |||| |||||||||| |||| |
|
|
| T |
18462651 |
aaaatattagagatcattcgttcgttggatcttccaaataatcctttggatgacattactgaccaggtagtgat |
18462578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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