View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_26 (Length: 501)
Name: NF4125_low_26
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 116 - 385
Target Start/End: Complemental strand, 11878452 - 11878183
Alignment:
| Q |
116 |
acataaccttttggtagtttgtgataaagaataatccaaatttagctttgtatttcctactacatgtccacgtatttgtggggttatgagcatgaattat |
215 |
Q |
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| T |
11878452 |
acataaccttttggtagtttgtgataaagaataatccaaatttagctttgtatttcctactacatgtccacgtatttgtggggttatgagcatgaattat |
11878353 |
T |
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| Q |
216 |
agaatatggtacaaatatctaaccaaaatcaatattaaaaacatgatacccttaattatacaacttaattatgtaaatgtatataatgtatgaactggtg |
315 |
Q |
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| T |
11878352 |
agaatatggtacaaatatctaaccaaaatcaatattaaaaacatgatacccttaattatacaacttaattatgtaaatgtatataatgtatgaactggtg |
11878253 |
T |
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| Q |
316 |
tgggcaatatgtggggggaagaagacagaatgaggaattattactatgccaatagtgcaagttcaacacc |
385 |
Q |
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| T |
11878252 |
tgggcaatatgtggggggaagaagacagaatgaggagttattactatgccaatagtggaagttcatcacc |
11878183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 11878129 - 11878081
Alignment:
| Q |
438 |
aagccatgtgacttctcaataatgagattaacatgtgagatataatgtt |
486 |
Q |
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| T |
11878129 |
aagccatgtgacttctcaataatgagattaacatgtgagatataatgtt |
11878081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 11878560 - 11878528
Alignment:
| Q |
9 |
ttgtaacattgtgagattttgttccactaattg |
41 |
Q |
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| T |
11878560 |
ttgtaacattgtgagattttgttccactaattg |
11878528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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